Evidence map›Paper›PMID 34981761›Full record

ArticleActa crystallographica. Section D, Structural biology2022

Two states of a light-sensitive membrane protein captured at room temperature using thin-film sample mounts.

Danny Axford, Peter J Judge, Juan F Bada Juarez, Tristan O C Kwan, James Birch, Javier Vinals, Anthony Watts, Isabel Moraes

Open access · hybridAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Danny AxfordDiamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom.ORCID 0000-0001-7694-8525
Peter J JudgeBiochemistry Department, University of Oxford, South Parks Road, Oxford OX1 3QU, United Kingdom.ORCID 0000-0003-0609-0900
Juan F Bada JuarezBiochemistry Department, University of Oxford, South Parks Road, Oxford OX1 3QU, United Kingdom.ORCID 0000-0002-1337-6424
Tristan O C KwanNational Physical Laboratory, Hampton Road, Teddington, London, United Kingdom.ORCID 0000-0002-5524-6409
James BirchDiamond Light Source, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom.ORCID 0000-0003-3269-8792
Javier VinalsBiochemistry Department, University of Oxford, South Parks Road, Oxford OX1 3QU, United Kingdom.ORCID 0000-0001-7573-7064
Anthony WattsBiochemistry Department, University of Oxford, South Parks Road, Oxford OX1 3QU, United Kingdom.ORCID 0000-0003-4976-1102
Isabel MoraesNational Physical Laboratory, Hampton Road, Teddington, London, United Kingdom.ORCID 0000-0002-7427-5467
University of Oxford · GBDiamond Light Source · GBNational Physical Laboratory · GB

Funding

Biotechnology and Biological Sciences Research Council BB/N006011/1)Defence Science and Technology Laboratory DSTLX-1000099768Wellcome TrustWellcome Trust 202892/Z/16/Z
6 · The paper itself

Abstract

Room-temperature diffraction methods are highly desirable for dynamic studies of biological macromolecules, since they allow high-resolution structural data to be collected as proteins undergo conformational changes. For crystals grown in lipidic cubic phase (LCP), an extruder is commonly used to pass a stream of microcrystals through the X-ray beam; however, the sample quantities required for this method may be difficult to produce for many membrane proteins. A more sample-efficient environment was created using two layers of low X-ray transmittance polymer films to mount crystals of the archaerhodopsin-3 (AR3) photoreceptor and room-temperature diffraction data were acquired. By using transparent and opaque polymer films, two structures, one corresponding to the desensitized, dark-adapted (DA) state and the other to the ground or light-adapted (LA) state, were solved to better than 1.9 Å resolution. All of the key structural features of AR3 were resolved, including the retinal chromophore, which is present as the 13-cis isomer in the DA state and as the all-trans isomer in the LA state. The film-sandwich sample environment enables diffraction data to be recorded at room temperature in both illuminated and dark conditions, which more closely approximate those in vivo. This simple approach is applicable to a wide range of membrane proteins crystallized in LCP and light-sensitive samples in general at synchrotron and laboratory X-ray sources.

Indexed as

Archaeal ProteinsCrystallizationCrystallography, X-RayHalorubrumIsomerismLightLipidsMembrane ProteinsPhotoreceptors, MicrobialPolymersProton PumpsRetinaTemperatureX-Ray DiffractionX-RaysArchaeal Proteinsarchaerhodopsin protein, ArchaeaLipidsMembrane ProteinsPhotoreceptors, MicrobialPolymersProton PumpsarchaerhodopsinLCPlipidic cubic phasemembrane proteinsmicrobial rhodopsinphotoreceptorspolymer filmsproton transportretinalroom temperaturesynchrotronthin-film sample

Identifiers

PMID34981761
PMCPMC8725165
OpenAlexW4200341143

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.