Evidence map›Paper›PMID 34981069›Full record

ArticlemedRxiv : the preprint server for health sciences2021

Context-specific emergence and growth of the SARS-CoV-2 Delta variant.

John T McCrone, Verity Hill, Sumali Bajaj, Rosario Evans Pena, Ben C Lambert, Rhys Inward, Samir Bhatt, Erik Volz, Christopher Ruis, Simon Dellicour and 31 more

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in medRxiv : the preprint server for health sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

41 authors.

John T McCroneInstitute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK.
Verity HillInstitute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK.
Sumali BajajDepartment of Zoology, University of Oxford, Oxford, UK.
Rosario Evans PenaDepartment of Zoology, University of Oxford, Oxford, UK.
Ben C LambertDepartment of Computer Science, University of Oxford, Oxford, UK.
Rhys InwardDepartment of Zoology, University of Oxford, Oxford, UK.
Samir BhattMRC Centre of Global Infectious Disease Analysis, Jameel Institute for Disease and Emergency Analytics, Imperial College London, London, UK.
Erik VolzMRC Centre of Global Infectious Disease Analysis, Jameel Institute for Disease and Emergency Analytics, Imperial College London, London, UK.
Christopher RuisMolecular Immunity Unit, Department of Medicine, Cambridge University, Cambridge, UK.
Simon DellicourSpatial Epidemiology Lab (SpELL), Université Libre de Bruxelles, Bruxelles, Belgium.
Guy BaeleDepartment of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium.
Alexander E ZarebskiDepartment of Zoology, University of Oxford, Oxford, UK.
Adam SadilekGoogle, Mountain View, CA, USA.
Neo WuGoogle, Mountain View, CA, USA.
Aaron SchneiderGoogle, Mountain View, CA, USA.
Xiang JiDepartment of Mathematics, School of Science & Engineering, Tulane University, New Orleans, LA, USA.
Jayna RaghwaniDepartment of Zoology, University of Oxford, Oxford, UK.
Ben JacksonInstitute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK.
Rachel ColquhounInstitute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK.
Áine O'TooleInstitute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK.
Thomas P PeacockDepartment of Infectious Disease, Imperial College London, London, UK.
Kate TwohigUK Health Security Agency, London, UK.
Simon ThelwallUK Health Security Agency, London, UK.
Gavin DabreraUK Health Security Agency, London, UK.
Richard MyersUK Health Security Agency, London, UK.
COVID-19 genomics UK (COG-UK) consortium
Nuno R FariaDepartment of Zoology, University of Oxford, Oxford, UK.
Carmen HuberBlueDot, Toronto, Canada.
Isaac I BogochDivisions of Internal Medicine & Infectious Diseases, Toronto General Hospital, University Health Network, Toronto, Canada.
Kamran KhanBlueDot, Toronto, Canada.
Louis du PlessisDepartment of Zoology, University of Oxford, Oxford, UK.
Jeffrey C BarrettWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
David M AanensenWellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK.
Wendy S BarclayDepartment of Infectious Disease, Imperial College London, London, UK.
Meera ChandUK Health Security Agency, London, UK.
Thomas ConnorPathogen Genomics Unit, Public Health Wales NHS Trust, Cardiff, UK.
Nicholas J LomanInstitute of Microbiology and Infection, University of Birmingham, Birmingham, UK.
Marc A SuchardDepartments of Biostatistics, Biomathematics and Human Genetics, University of California, Los Angeles, Los Angeles, CA, USA.
Oliver G PybusDepartment of Zoology, University of Oxford, Oxford, UK.
Andrew RambautInstitute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK.
Moritz U G KraemerDepartment of Zoology, University of Oxford, Oxford, UK.

Funding

Technology CoreU19AI135995 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI Laura D. Hughes · 2018 to 2026
$32.0M
Statistical Innovation to Integrate Sequences and Phenotypes for Scalable Phylodynamic InferenceR01AI153044 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Marc A. Suchard · 2021 to 2026
$2.4M
Medical Research Council MC_PC_19012Medical Research Council MR/R015600/1Medical Research Council MR/S019510/1Medical Research Council MR/W005611/1NIAID NIH HHS R01 AI153044NIAID NIH HHS U19 AI135995Wellcome Trust
6 · The paper itself

Abstract

The Delta variant of concern of SARS-CoV-2 has spread globally causing large outbreaks and resurgences of COVID-19 cases

Identifiers

PMID34981069
PMCPMC8722612

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.