Evidence map›Paper›PMID 34977887›Full record

ArticleJACS Au2021

Solution Structure and Conformational Flexibility of a Polyketide Synthase Module.

Maja Klaus, Emanuele Rossini, Andreas Linden, Karthik S Paithankar, Matthias Zeug, Zoya Ignatova, Henning Urlaub, Chaitan Khosla, Jürgen Köfinger, Gerhard Hummer and 1 more

Open access · goldAbstract read
In one paragraph

Article in JACS Au, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Small-angle X-ray scattering studies of enzymes.Current opinion in chemical biology · 2023
    Review
  9. Article
  10. Article
  11. Fragment antigen binding domains (FSynthetic and systems biotechnology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Maja KlausInstitute of Organic Chemistry and Chemical Biology, Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, Max-von-Laue Strasse 15, Frankfurt am Main 60438, Germany.
Emanuele RossiniDepartment of Theoretical Biophysics, Max Planck Institute of Biophysics, Max-von-Laue Strasse 3, Frankfurt am Main 60438, Germany.
Andreas LindenMax Planck Institute for Biophysical Chemistry, Am Fassberg 11, Goettingen 37077, Germany.
Karthik S PaithankarInstitute of Organic Chemistry and Chemical Biology, Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, Max-von-Laue Strasse 15, Frankfurt am Main 60438, Germany.
Matthias ZeugInstitute of Organic Chemistry and Chemical Biology, Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, Max-von-Laue Strasse 15, Frankfurt am Main 60438, Germany.ORCID https://orcid.org/0000-0002-7326-319X
Zoya IgnatovaInstitute for Biochemistry and Molecular Biology, University of Hamburg, Notkestrasse 85, Hamburg 22607, Germany.
Henning UrlaubMax Planck Institute for Biophysical Chemistry, Am Fassberg 11, Goettingen 37077, Germany.
Chaitan KhoslaDepartment of Chemistry, Stanford ChEM-H, Department of Chemical Engineering Stanford University, Stanford, California 94305, United States.ORCID https://orcid.org/0000-0001-6529-495X
Jürgen KöfingerDepartment of Theoretical Biophysics, Max Planck Institute of Biophysics, Max-von-Laue Strasse 3, Frankfurt am Main 60438, Germany.ORCID https://orcid.org/0000-0001-8367-1077
Gerhard HummerDepartment of Theoretical Biophysics, Max Planck Institute of Biophysics, Max-von-Laue Strasse 3, Frankfurt am Main 60438, Germany.ORCID https://orcid.org/0000-0001-7768-746X
Martin GriningerInstitute of Organic Chemistry and Chemical Biology, Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, Max-von-Laue Strasse 15, Frankfurt am Main 60438, Germany.ORCID https://orcid.org/0000-0002-7269-0667
Goethe University Frankfurt · DEMax Planck Institute of Biophysics · DEUniversitätsmedizin Göttingen · DEStanford University · USUniversität Hamburg · DE

Funding

Structure, Mechanism, and Engineering of Assembly Line Polyketide SynthasesR01GM087934 · NIGMS · STANFORD UNIVERSITY · PI KHOSLA, CHAITAN · 2009 to 2021
$4.9M
NIGMS NIH HHS R01 GM087934
6 · The paper itself

Abstract

Polyketide synthases (PKSs) are versatile C-C bond-forming enzymes that are broadly distributed in bacteria and fungi. The polyketide compound family includes many clinically useful drugs such as the antibiotic erythromycin, the antineoplastic epothilone, and the cholesterol-lowering lovastatin. Harnessing PKSs for custom compound synthesis remains an open challenge, largely because of the lack of knowledge about key structural properties. Particularly, the domains-well characterized on their own-are poorly understood in their arrangement, conformational dynamics, and interplay in the intricate quaternary structure of modular PKSs. Here, we characterize module 2 from the 6-deoxyerythronolide B synthase by small-angle X-ray scattering and cross-linking mass spectrometry with coarse-grained structural modeling. The results of this hybrid approach shed light on the solution structure of a cis-AT type PKS module as well as its inherent conformational dynamics. Supported by a directed evolution approach, we also find that acyl carrier protein (ACP)-mediated substrate shuttling appears to be steered by a nonspecific electrostatic interaction network.

Identifiers

PMID34977887
PMCPMC8717363
OpenAlexW3206019034

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.