Evidence map›Paper›PMID 34977583›Full record

ArticleRSC chemical biology2021

Solution NMR and racemic crystallography provide insights into a novel structural class of cyclic plant peptides.

Colton D Payne, Grishma Vadlamani, Fatemeh Hajiaghaalipour, Taj Muhammad, Mark F Fisher, Håkan S Andersson, Ulf Göransson, Richard J Clark, Charles S Bond, Joshua S Mylne and 1 more

Abstract read
In one paragraph

Article in RSC chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Colton D PayneThe University of Queensland, School of Biomedical Sciences Brisbane QLD 4072 Australia j.rosengren@uq.edu.au.ORCID https://orcid.org/0000-0002-9316-1465
Grishma VadlamaniCurtin University, Centre for Crop and Disease Management, School of Molecular and Life Sciences Bentley WA 6102 Australia.ORCID https://orcid.org/0000-0002-4198-6967
Fatemeh HajiaghaalipourThe University of Queensland, School of Biomedical Sciences Brisbane QLD 4072 Australia j.rosengren@uq.edu.au.ORCID https://orcid.org/0000-0002-1716-3178
Taj MuhammadUppsala University, Division of Pharmacognosy, Department of Pharmaceutical Biosciences 75124 Uppsala Sweden.ORCID https://orcid.org/0000-0002-6636-5809
Mark F FisherCurtin University, Centre for Crop and Disease Management, School of Molecular and Life Sciences Bentley WA 6102 Australia.ORCID https://orcid.org/0000-0002-6971-4285
Håkan S AnderssonUppsala University, Division of Pharmacognosy, Department of Pharmaceutical Biosciences 75124 Uppsala Sweden.ORCID https://orcid.org/0000-0003-1241-8888
Ulf GöranssonUppsala University, Division of Pharmacognosy, Department of Pharmaceutical Biosciences 75124 Uppsala Sweden.ORCID https://orcid.org/0000-0002-5005-9612
Richard J ClarkThe University of Queensland, School of Biomedical Sciences Brisbane QLD 4072 Australia j.rosengren@uq.edu.au.ORCID https://orcid.org/0000-0002-6807-5426
Charles S BondThe University of Western Australia, School of Molecular Sciences Crawley WA 6009 Australia.ORCID https://orcid.org/0000-0002-9584-6783
Joshua S MylneCurtin University, Centre for Crop and Disease Management, School of Molecular and Life Sciences Bentley WA 6102 Australia.ORCID https://orcid.org/0000-0003-4957-6388
K Johan RosengrenThe University of Queensland, School of Biomedical Sciences Brisbane QLD 4072 Australia j.rosengren@uq.edu.au.ORCID https://orcid.org/0000-0002-5007-8434

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Head-to-tail cyclic and disulfide-rich peptides are natural products with applications in drug design. Among these are the PawS-Derived Peptides (PDPs) produced in seeds of the daisy plant family. PDP-23 is a unique member of this class in that it is twice the typical size and adopts two β-hairpins separated by a hinge region. The β-hairpins, both stabilised by a single disulfide bond, fold together into a V-shaped tertiary structure creating a hydrophobic core. In water two PDP-23 molecules merge their hydrophobic cores to form a square prism quaternary structure. Here, we synthesised PDP-23 and its enantiomer comprising d-amino acids and achiral glycine, which allowed us to confirm these solution NMR structural data by racemic crystallography. Furthermore, we discovered the related PDP-24. NMR analysis showed that PDP-24 does not form a dimeric structure and it has poor water solubility, but in less polar solvents adopts near identical secondary and tertiary structure to PDP-23. The natural role of these peptides in plants remains enigmatic, as we did not observe any antimicrobial or insecticidal activity. However, the plasticity of these larger PDPs and their ability to change structure under different conditions make them appealing peptide drug scaffolds.

Identifiers

PMID34977583
PMCPMC8637875

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.