Evidence map›Paper›PMID 34974274›Full record

ArticleJournal of infection and public health2022

Isolation and characterization of SARS-CoV-2 Beta variant from UAE travelers.

Pragya D Yadav, Prasad Sarkale, Alpana Razdan, Nivedita Gupta, Dimpal A Nyayanit, Rima R Sahay, Varsha Potdar, Deepak Y Patil, Shreekant Baradkar, Abhinendra Kumar and 4 more

Open access · goldAbstract read
In one paragraph

Article in Journal of infection and public health, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.6field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 27 citations in OpenAlex.

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  10. Prerequisite for COVID-19 Prediction: A Review on Factors Affecting the Infection Rate.International journal of environmental research and public health · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Pragya D YadavIndian Council of Medical Research-National Institute of Virology, Pune, Maharashtra 411021, India. Electronic address: hellopragya22@gmail.com.
Prasad SarkaleIndian Council of Medical Research-National Institute of Virology, Pune, Maharashtra 411021, India.
Alpana RazdanGenestrings Diagnostic Centre Pvt. Ltd., 3, MMTC, Geetanjali Enclave, New Delhi 110017, India.
Nivedita GuptaIndian Council of Medical Research, V. Ramalingaswami Bhawan, P.O. Box No. 4911, Ansari Nagar, New Delhi 110029, India.
Dimpal A NyayanitIndian Council of Medical Research-National Institute of Virology, Pune, Maharashtra 411021, India.
Rima R SahayIndian Council of Medical Research-National Institute of Virology, Pune, Maharashtra 411021, India.
Varsha PotdarIndian Council of Medical Research-National Institute of Virology, Pune, Maharashtra 411021, India.
Deepak Y PatilIndian Council of Medical Research-National Institute of Virology, Pune, Maharashtra 411021, India.
Shreekant BaradkarIndian Council of Medical Research-National Institute of Virology, Pune, Maharashtra 411021, India.
Abhinendra KumarIndian Council of Medical Research-National Institute of Virology, Pune, Maharashtra 411021, India.
Neeraj AggarwalIndian Council of Medical Research, V. Ramalingaswami Bhawan, P.O. Box No. 4911, Ansari Nagar, New Delhi 110029, India.
Anita M SheteIndian Council of Medical Research-National Institute of Virology, Pune, Maharashtra 411021, India.
Harmanmeet KaurIndian Council of Medical Research, V. Ramalingaswami Bhawan, P.O. Box No. 4911, Ansari Nagar, New Delhi 110029, India.
Sreelekshmy MohandasIndian Council of Medical Research-National Institute of Virology, Pune, Maharashtra 411021, India.
ICMR-National Institute of Virology · INIndian Council of Medical Research · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe emergence of SARS-CoV-2 variants in places where the virus is uncontained poses a global threat from the perspective of public health and vaccine efficacy. Travel has been important factor for the easy spread of SARS-CoV-2 variants worldwide. India has also observed the importation of SARS-CoV-2 variants through international travelers.

methodsIn this study, we have collected the oropharyngeal and nasopharyngeal swab specimens from 58 individuals with travel history from United Arab Emirates (UAE), East, West and South Africa, Qatar, Ukraine and Saudi Arabia arrived in India during February-March 2021. The clinical specimens were initially screened for SARS-CoV-2 using Real time RT-PCR. All the specimens were inoculated on to Vero CCL-81 cells for virus isolation. The viral isolates were further sequenced using Next-Generation Sequencing.

resultsAll 58 cases were tested positive for SARS-CoV-2 using Real time RT-PCR. Four specimens showed progressive infectivity with fusion of the infected cells with neighboring cells leading to large mass of cells. Replication competent virus was confirmed from culture supernatant of the passage 2 using Real time RT-PCR. Two plaque purified SARS-CoV-2 isolates demonstrated high viral RNA load of 3.8-7.5 × 10

conclusionThese findings suggest easier transmission of SARS-CoV-2 variants with human mobility through international travel. The isolated Beta variant would be useful to determine the protective efficacy of the currently available and upcoming COVID-19 vaccines in India.

Indexed as

COVID-19SARS-CoV-2COVID-19 VaccinesHumansMaleUnited Arab EmiratesCOVID-19 VaccinesBeta variantIndiaSARS-CoV-2TravelerUnited Arab EmiratesVariant of concern

Identifiers

PMID34974274
PMCPMC8704724
OpenAlexW4200469507

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.