Evidence map›Paper›PMID 34973142›Full record

ArticleJournal of clinical immunology2022

Prevalence of Pathogenic and Potentially Pathogenic Inborn Error of Immunity Associated Variants in Children with Severe Sepsis.

Kate F Kernan, Lina Ghaloul-Gonzalez, Jerry Vockley, Janette Lamb, Deborah Hollingshead, Uma Chandran, Rahil Sethi, Hyun-Jung Park, Robert A Berg, David Wessel and 16 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of clinical immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 23 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. International survey on immunological diagnostics in children with sepsis.Intensive care medicine. Paediatric and neonatal · 2026
    Article
  6. Observational
  7. Review
  8. Observational
  9. Article
  10. Article
  11. Article
  12. Autoinflammatory Contributors to Cytokine Storm.Advances in experimental medicine and biology · 2024
    Review
  13. Article
  14. Life (Basel, Switzerland) · 2023
    Article
  15. Review
  16. Article
  17. Article
  18. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors at 13 institutions in 1 country.

Kate F KernanDivision of Pediatric Critical Care Medicine, Department of Critical Care Medicine, Center for Critical Care Nephrology and Clinical Research Investigation and Systems Modeling of Acute Illness Center, Children's Hospital of Pittsburgh, University of Pittsburgh, Pittsburgh, PA, USA. kate.kernan@chp.edu.ORCID http://orcid.org/0000-0002-6337-841X
Lina Ghaloul-GonzalezDivision of Genetic and Genomic Medicine, Department of Pediatrics, Children's Hospital of Pittsburgh, University of Pittsburgh, Pittsburgh, PA, USA.
Jerry VockleyDivision of Genetic and Genomic Medicine, Department of Pediatrics, Children's Hospital of Pittsburgh, University of Pittsburgh, Pittsburgh, PA, USA.
Janette LambGenomics Core Laboratory, University of Pittsburgh, Pittsburgh, PA, USA.
Deborah HollingsheadGenomics Core Laboratory, University of Pittsburgh, Pittsburgh, PA, USA.
Uma ChandranDepartment of Biomedical Informatics, University of Pittsburgh, Pittsburgh, PA, USA.
Rahil SethiDepartment of Biomedical Informatics, University of Pittsburgh, Pittsburgh, PA, USA.
Hyun-Jung ParkDepartment of Genetics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA, USA.
Robert A BergDepartment of Anesthesiology and Critical Care Medicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
David WesselDivision of Critical Care Medicine, Department of Pediatrics, Children's National Hospital, Washington, DC, USA.
Murray M PollackDivision of Critical Care Medicine, Department of Pediatrics, Children's National Hospital, Washington, DC, USA.
Kathleen L MeertDivision of Critical Care Medicine, Department of Pediatrics, Children's Hospital of Michigan, Detroit, MI, USA.
Mark W HallDivision of Critical Care Medicine, Department of Pediatrics, The Research Institute at Nationwide Children's Hospital Immune Surveillance Laboratory, and Nationwide Children's Hospital, Columbus, OH, USA.
Christopher J L NewthDivision of Pediatric Critical Care Medicine, Department of Anesthesiology and Pediatrics, Children's Hospital Los Angeles, Los Angeles, CA, USA.
John C LinDivision of Critical Care Medicine, Department of Pediatrics, St. Louis Children's Hospital, St. Louis, MO, USA.
Allan DoctorDivision of Critical Care Medicine, Department of Pediatrics, St. Louis Children's Hospital, St. Louis, MO, USA.
Tom ShanleyDivision of Critical Care Medicine, Department of Pediatrics, C. S. Mott Children's Hospital, Ann Arbor, MI, USA.
Tim CornellDivision of Critical Care Medicine, Department of Pediatrics, C. S. Mott Children's Hospital, Ann Arbor, MI, USA.
Rick E HarrisonDivision of Critical Care Medicine, Department of Pediatrics, Mattel Children's Hospital at University of California Los Angeles, Los Angeles, CA, USA.
Athena F ZuppaDepartment of Anesthesiology and Critical Care Medicine, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Russel BanksDepartment of Pediatrics, University of Utah, Salt Lake City, UT, USA.
Ron W ReederDepartment of Pediatrics, University of Utah, Salt Lake City, UT, USA.
Richard HolubkovDepartment of Pediatrics, University of Utah, Salt Lake City, UT, USA.
Daniel A NottermanDepartment of Molecular Biology, Princeton University, Princeton, NJ, USA.
J Michael DeanDepartment of Pediatrics, University of Utah, Salt Lake City, UT, USA.
Joseph A CarcilloDivision of Pediatric Critical Care Medicine, Department of Critical Care Medicine, Center for Critical Care Nephrology and Clinical Research Investigation and Systems Modeling of Acute Illness Center, Children's Hospital of Pittsburgh, University of Pittsburgh, Pittsburgh, PA, USA.
University of Pittsburgh · USUniversity of Utah · USChildren's Hospital of Philadelphia · USChildren's National · USCentral Michigan University · USChildren's Hospital of Los Angeles · USC. S. Mott Children's Hospital · USLucile Packard Children's Hospital · USNationwide Children's Hospital · USPrinceton University · USSt. Louis Children's Hospital · USUniversity of California, Los Angeles · USUniversity of Maryland, Baltimore · US

Funding

Data Coordinating Center for the Collaborative Pediatric Critical Care Research NetworkU01HD049934 · NICHD · UNIVERSITY OF UTAH · PI DEAN, JONATHAN MICHAEL · 2005 to 2020
$35.2M
Pediatric Critical Care Scientist Development ProgramK12HD047349 · NICHD · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI HEATHER T. KEENAN, Kevin M Watt · 2004 to 2026
$17.0M
Inflammation Phenotypes in Pediatric Sepsis Induced Multiple Organ Failure RenewalR01GM108618 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI JOSEPH A CARCILLO · 2014 to 2026
$5.4M
Physiologically Guided Ventilator Strategies in ChildrenU10HD050012 · NICHD · CHILDREN'S HOSPITAL OF LOS ANGELES · PI NEWTH, CHRISTOPHER JOHN · 2005 to 2014
$3.7M
Neurodevelopmental Outcome after Cardiac Intensive CareU10HD049981 · NICHD · CHILDREN'S RESEARCH INSTITUTE · PI WESSEL, DAVID LLOYD · 2005 to 2014
$3.7M
Collaborative Pediatric Critical Care Research NetworkU10HD050096 · NICHD · WAYNE STATE UNIVERSITY · PI MEERT, KATHLEEN L. · 2005 to 2014
$3.2M
Metoclopramide prevents PICU nosocomial infectionU10HD049983 · NICHD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CARCILLO, JOSEPH A · 2005 to 2014
$3.1M
Pediatric Critical Care Research Network at Children's Hospital of PhiladelphiaU10HD063108 · NICHD · CHILDREN'S HOSP OF PHILADELPHIA · PI BERG, ROBERT ALLEN · 2010 to 2014
$1.4M
Predicting Morbidity from Pediatric Critical CareU10HD063114 · NICHD · PHOENIX CHILDREN'S HOSPITAL · PI DALTON, HEIDI J, LUND, DENNIS P · 2010 to 2014
$1.4M
Collaborative Pediatric Research Critical Care Network(U10)U10HD063106 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SHANLEY, THOMAS P. · 2010 to 2014
$1.3M
Collaborative Pediatric Critical Care Research Network (CPCCRN)RL1HD107777 · NICHD · CHILDREN'S HOSP OF PHILADELPHIA · PI ROBERT ALLEN BERG, Julie C. Hollows Fitzgerald · 2021 to 2026
$1.1M
Collaborative Pediatric Critical Care Research Network (CPCCRN)RL1HD107779 · NICHD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI JOSEPH A CARCILLO · 2021 to 2026
$942k
NIAID NIH HHS L30 AI147146NIAID NIH HHS L30AI147146NICHD NIH HHS 5U01HD049934-10S1NICHD NIH HHS K12HD047349NICHD NIH HHS U01 HD049934NIGMS NIH HHS R01 GM108618NIGMS NIH HHS R01GM108618NIH HHS U01HD049934NIH HHS U10HD049981NIH HHS U10HD049983NIH HHS U10HD050012NIH HHS U10HD050096NIH HHS U10HD063108NIH HHS U10HD063114NIH HHS U10HD63106
6 · The paper itself

Abstract

purposeOur understanding of inborn errors of immunity is increasing; however, their contribution to pediatric sepsis is unknown.

methodsWe used whole-exome sequencing (WES) to characterize variants in genes related to monogenic immunologic disorders in 330 children admitted to intensive care for severe sepsis. We defined candidate variants as rare variants classified as pathogenic or potentially pathogenic in QIAGEN's Human Gene Mutation Database or novel null variants in a disease-consistent inheritance pattern. We investigated variant correlation with infection and inflammatory phenotype.

resultsMore than one in two children overall and three of four African American children had immunodeficiency-associated variants. Children with variants had increased odds of isolating a blood or urinary pathogen (blood: OR 2.82, 95% CI: 1.12-7.10, p = 0.023, urine: OR: 8.23, 95% CI: 1.06-64.11, p = 0.016) and demonstrating increased inflammation with hyperferritinemia (ferritin [Formula: see text] ng/mL, OR: 2.16, 95% CI: 1.28-3.66, p = 0.004), lymphopenia (lymphocyte count < 1000/µL, OR: 1.66, 95% CI: 1.06 - 2.60, p = 0.027), thrombocytopenia (platelet count < 150,000/µL, OR: 1.76, 95% CI: 1.12-2.76, p = 0.013), and CRP greater than 10 mg/dl (OR: 1.71, 95% CI: 1.10-2.68, p = 0.017). They also had increased odds of requiring extracorporeal membrane oxygenation (ECMO, OR: 4.19, 95% CI: 1.21-14.5, p = 0.019).

conclusionHerein, we describe the genetic findings in this severe pediatric sepsis cohort and their microbiologic and immunologic significance, providing evidence for the phenotypic effect of these variants and rationale for screening children with life-threatening infections for potential inborn errors of immunity.

Indexed as

Immunologic Deficiency SyndromesSepsisChildExome SequencingHumansPhenotypePrevalenceHyperinflammationInborn errors of immunityPrimary immunodeficiencySepsis

Identifiers

PMID34973142
PMCPMC8720168
OpenAlexW4225524116

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.