Evidence map›Paper›PMID 34971648›Full record

ArticleThe Journal of allergy and clinical immunology2022

Multiomics analysis identifies BIRC3 as a novel glucocorticoid response-associated gene.

Mengyuan Kan, Avantika R Diwadkar, Haoyue Shuai, Jaehyun Joo, Alberta L Wang, Mei-Sing Ong, Joanne E Sordillo, Carlos Iribarren, Meng X Lu, Natalia Hernandez-Pacheco and 7 more

Open access · greenAbstract read
In one paragraph

Article in The Journal of allergy and clinical immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Asthma Exacerbations: The Genes Behind the Scenes.Journal of investigational allergology & clinical immunology · 2023
    Review
  6. Article
  7. Review
  8. Recent progress in the genetic and epigenetic underpinnings of atopy.The Journal of allergy and clinical immunology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 8 institutions in 4 countries.

Mengyuan KanDepartment of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, Pa.
Avantika R DiwadkarDepartment of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, Pa.
Haoyue ShuaiDepartment of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, Pa.
Jaehyun JooDepartment of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, Pa.
Alberta L WangChanning Division of Network Medicine, Brigham and Women's Hospital, Boston, Mass; Division of Allergy and Clinical Immunology, Brigham and Women's Hospital, Boston, Mass.
Mei-Sing OngPrecision Medicine Translational Research Center, Department of Population Medicine, Harvard Pilgrim Health Care Institute and Harvard Medical School, Boston, Mass.
Joanne E SordilloPrecision Medicine Translational Research Center, Department of Population Medicine, Harvard Pilgrim Health Care Institute and Harvard Medical School, Boston, Mass.
Carlos IribarrenKaiser Permanente Division of Research, Kaiser Permanente, Oakland, Calif.
Meng X LuKaiser Permanente Division of Research, Kaiser Permanente, Oakland, Calif.
Natalia Hernandez-PachecoDepartment of Clinical Science and Education, Södersjukhuset, Karolinska Institutet, Stockholm, Sweden; CIBER de Enfermedades Respiratorias, Instituto de Salud Carlos III, Madrid, Spain.
Javier Perez-GarciaGenomics and Health Group, Department of Biochemistry, Microbiology, Cell Biology and Genetics, Universidad de La Laguna, San Cristóbal de La Laguna, Spain.
Mario GorenjakCenter for Human Molecular Genetics and Pharmacogenomics, Faculty of Medicine, University of Maribor, Maribor, Slovenia.
Uroš PotočnikCenter for Human Molecular Genetics and Pharmacogenomics, Faculty of Medicine, University of Maribor, Maribor, Slovenia; Laboratory for Biochemistry, Molecular Biology, and Genomics, Faculty of Chemistry and Chemical Engineering, University of Maribor, Maribor, Slovenia.
Esteban G BurchardDepartment of Medicine, University of California, San Francisco, Calif; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, Calif.
Maria Pino-YanesCIBER de Enfermedades Respiratorias, Instituto de Salud Carlos III, Madrid, Spain; Genomics and Health Group, Department of Biochemistry, Microbiology, Cell Biology and Genetics, Universidad de La Laguna, San Cristóbal de La Laguna, Spain; Instituto de Tecnologías Biomédicas, Universidad de La Laguna, Faculty of Health Sciences, San Cristóbal de La Laguna, Spain.
Ann Chen WuPrecision Medicine Translational Research Center, Department of Population Medicine, Harvard Pilgrim Health Care Institute and Harvard Medical School, Boston, Mass.
Blanca E HimesDepartment of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, Pa. Electronic address: bhimes@pennmedicine.upenn.edu.
University of Pennsylvania · USHarvard University · USKaiser Permanente · USUniversidad de La Laguna · ESUniversity of Maribor · SIBrigham and Women's Hospital · USInstituto de Salud Carlos III · ESUniversity of California, San Francisco · US

Funding

Translational Research Support CoreP30ES013508 · NIEHS · UNIVERSITY OF PENNSYLVANIA · PI A. Clementina Mesaros · 2006 to 2026
$35.3M
The Airway Functional Genomics of Bronchodilator Drug Response in Minority Children with AsthmaR01HL117004 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AHITUV, NADAV, SEIBOLD, MAX A · 2013 to 2022
$9.3M
Gene-environments and Admixture in Latino Asthmatics (GALA 2)R01ES015794 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURCHARD, ESTEBAN GONZALEZ · 2008 to 2012
$5.4M
Genes, air pollution, and asthma severity in minority childrenR01MD010443 · NIMHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SEIBOLD, MAX A, ZIV, ELAD · 2016 to 2020
$3.8M
CEBPD-Mediated Mechanisms of Glucocorticoid Insensitivity in Severe AsthmaR01HL133433 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI HIMES, BLANCA E · 2017 to 2021
$3.2M
Epigenomics of asthma risk factors and clinical subtypes in minority childrenR01HL155024 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BORRELL, LUISA N, ZAITLEN, NOAH A · 2021 to 2024
$2.9M
Integrative Analyses to Uncover Biological Mechanisms Mediating Gene Associations with Asthma Drug Response Among Minority ChildrenR01HL141992 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI BURCHARD, ESTEBAN GONZALEZ, HIMES, BLANCA E · 2018 to 2019
$855k
Clinical prediction and epigenetic regulation of asthma and rhinitisK23HL151819 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI WANG, ALBERTA L. · 2021 to 2023
$639k
NHLBI NIH HHS K23 HL151819NHLBI NIH HHS R01 HL117004NHLBI NIH HHS R01 HL133433NHLBI NIH HHS R01 HL141992NHLBI NIH HHS R01 HL155024NIAID NIH HHS L40 AI138248NIEHS NIH HHS P30 ES013508NIEHS NIH HHS R01 ES015794NIMHD NIH HHS R01 MD010443
6 · The paper itself

Abstract

backgroundInhaled corticosteroid (ICS) response among patients with asthma is influenced by genetics, but biologically actionable insights based on associations have not been found. Various glucocorticoid response omics data sets are available to interrogate their biological effects.

objectiveWe sought to identify functionally relevant ICS-response genetic associations by integrating complementary multiomics data sets.

methodsVariants with P values less than 10

resultsFour variants had significant (q value < 0.05) multiomics integrative scores. These variants were in a locus consisting of 52 variants in high linkage disequilibrium (r

conclusionsBIRC3 should be prioritized for further functional studies of ICS response.

Indexed as

AsthmaGlucocorticoidsAdrenal Cortex HormonesBaculoviral IAP Repeat-Containing 3 ProteinGenome-Wide Association StudyHumansLungPolymorphism, Single NucleotideReceptors, GlucocorticoidRNA Polymerase IIAdrenal Cortex HormonesBaculoviral IAP Repeat-Containing 3 ProteinBIRC3 protein, humanGlucocorticoidsReceptors, GlucocorticoidRNA Polymerase IIAsthmaChIP-Seqgenome-wide association studyglucocorticoid receptorglucocorticoid responseinhaled corticosteroidsintegrative analysismultiomicstranscriptomics

Identifiers

PMID34971648
PMCPMC9177524
OpenAlexW4200297083

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.