Evidence map›Paper›PMID 34970712›Full record

ArticleEcoHealth2021

Metagenomic Analysis Reveals Previously Undescribed Bat Coronavirus Strains in Eswatini.

Julie Teresa Shapiro, Sarah Mollerup, Randi Holm Jensen, Jill Katharina Olofsson, Nam-Phuong D Nguyen, Thomas Arn Hansen, Lasse Vinner, Ara Monadjem, Robert A McCleery, Anders J Hansen

Abstract read
In one paragraph

Article in EcoHealth, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Julie Teresa ShapiroSchool of Natural Resources and Environment, University of Florida, Gainesville, FL, USA. julie.teresa.shapiro@gmail.com.ORCID 0000-0002-4539-650X
Sarah MollerupCentre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark.
Randi Holm JensenCentre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark.
Jill Katharina OlofssonCentre for GeoGenetics, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark.
Nam-Phuong D NguyenComputer Science and Engineering, University of California, San Diego, La Jolla, CA, USA.
Thomas Arn HansenCentre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark.
Lasse VinnerCentre for GeoGenetics, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark.
Ara MonadjemDepartment of Wildlife Ecology and Conservation, University of Florida, Gainesville, FL, USA.
Robert A McCleerySchool of Natural Resources and Environment, University of Florida, Gainesville, FL, USA.
Anders J HansenCentre for GeoGenetics, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark.

Funding

Computational methods for detecting patterns of complex genomic variationR01GM114362 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Vineet Bafna · 2016 to 2026
$3.1M
Bat Conservation International Student Research GrantInnovationsfonden grant no. 019-2011-2Innovationsfonden The Genome Denmark platformNational Science Foundation ACI-1053575National Science Foundation Engineering Discovery EnvironmNational Science Foundation Extreme ScienceNational Science Foundation Graduate Research Opportunities WorldwideNational Science Foundation GRFP DGE-1315138National Science Foundation TG-ASC160034NIGMS NIH HHS R01 GM114362NIH HHS 1R01GM114362
6 · The paper itself

Abstract

We investigated the prevalence of coronaviruses in 44 bats from four families in northeastern Eswatini using high-throughput sequencing of fecal samples. We found evidence of coronaviruses in 18% of the bats. We recovered full or near-full-length genomes from two bat species: Chaerephon pumilus and Afronycteris nana, as well as additional coronavirus genome fragments from C. pumilus, Epomophorus wahlbergi, Mops condylurus, and Scotophilus dinganii. All bats from which we detected coronaviruses were captured leaving buildings or near human settlements, demonstrating the importance of continued surveillance of coronaviruses in bats to better understand the prevalence, diversity, and potential risks for spillover.

Indexed as

ChiropteraCoronavirusCoronavirus InfectionsMetagenomicsAnimalsEswatiniGenetic VariationGenome, ViralPhylogenyalphacoronavirusbetacoronavirusChiropteraemerging infectious diseaseshuman–wildlife interfacezoonotic disease

Identifiers

PMID34970712
PMCPMC8718178

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.