Evidence map›Paper›PMID 34970709›Full record

ArticleNeuroinformatics2022

Building FAIR Functionality: Annotating Events in Time Series Data Using Hierarchical Event Descriptors (HED).

Kay Robbins, Dung Truong, Alexander Jones, Ian Callanan, Scott Makeig

Erratum issuedAbstract read
In one paragraph

Article in Neuroinformatics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. A streamable large-scale clinical EEG dataset for Deep Learning.Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference · 2022
    Article
  10. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Kay RobbinsDepartment of Computer Science, University of Texas At San Antonio, San Antonio, USA.ORCID http://orcid.org/0000-0002-7147-5797
Dung TruongSwartz Center for Computational Neuroscience, Institute for Neural Computation, University of California San Diego, San Diego, USA.
Alexander JonesDepartment of Computer Science, University of Texas At San Antonio, San Antonio, USA.
Ian CallananDepartment of Computer Science, University of Texas At San Antonio, San Antonio, USA.
Scott MakeigSwartz Center for Computational Neuroscience, Institute for Neural Computation, University of California San Diego, San Diego, USA. smakeig@ucsd.edu.

Funding

EEGLAB: Software for Analysis of Human Brain DynamicsR01NS047293 · NINDS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Arnaud Delorme, Scott Makeig · 2004 to 2026
$10.2M
BRAIN INITIATIVE RESOURCE: DEVELOPMENT OF A HUMAN NEUROELECTROMAGNETIC DATA ARCHIVE AND TOOLS RESOURCE (NEMAR)R24MH120037 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Arnaud Delorme, Amitava Majumdar · 2019 to 2026
$5.5M
The Open EEGLAB Portal ProjectR01EB023297 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DELORME, ARNAUD, MAJUMDAR, AMITAVA · 2017 to 2020
$2.3M
BRAIN Initiative: Hierarchical Event Descriptors (HED): a system to characterize events in neurobehavioral dataRF1MH126700 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DELORME, ARNAUD, MAKEIG, SCOTT · 2022 to 2022
$1.0M
NIBIB NIH HHS R01 EB023297NIMH NIH HHS R24 MH120037NIMH NIH HHS RF1 MH126700NINDS NIH HHS R01 NS047293
6 · The paper itself

Abstract

Human electrophysiological and related time series data are often acquired in complex, event-rich environments. However, the resulting recorded brain or other dynamics are often interpreted in relation to more sparsely recorded or subsequently-noted events. Currently a substantial gap exists between the level of event description required by current digital data archiving standards and the level of annotation required for successful analysis of event-related data across studies, environments, and laboratories. Manifold challenges must be addressed, most prominently ontological clarity, vocabulary extensibility, annotation tool availability, and overall usability, to allow and promote sharing of data with an effective level of descriptive detail for labeled events. Motivating data authors to perform the work needed to adequately annotate their data is a key challenge. This paper describes new developments in the Hierarchical Event Descriptor (HED) system for addressing these issues. We recap the evolution of HED and its acceptance by the Brain Imaging Data Structure (BIDS) movement, describe the recent release of HED-3G, a third generation HED tools and design framework, and discuss directions for future development. Given consistent, sufficiently detailed, tool-enabled, field-relevant annotation of the nature of recorded events, prospects are bright for large-scale analysis and modeling of aggregated time series data, both in behavioral and brain imaging sciences and beyond.

Indexed as

Data CurationTime FactorsElectronic Data ProcessingHumansBIDSEEGEvent annotationFAIRHEDHED-3GHierarchical Event DescriptorsNeuroimaging

Identifiers

PMID34970709
PMCPMC9546996

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.