Evidence map›Paper›PMID 34970540›Full record

ArticleFrontiers in cell and developmental biology2021

Transcriptome Dynamics of Human Neuronal Differentiation From iPSC.

Meltem Kuruş, Soheil Akbari, Doğa Eskier, Ahmet Bursalı, Kemal Ergin, Esra Erdal, Gökhan Karakülah

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cell and developmental biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.7field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Metamorphosis and lncRNAs: A Close Relationship.Genesis (New York, N.Y. : 2000) · 2026
    Review
  3. Review
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  7. Plants (Basel, Switzerland) · 2023
    Article
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Meltem KuruşDepartment of Histology and Embryology, Faculty of Medicine, Izmir Katip Çelebi University, Izmir, Turkey.
Soheil Akbariİzmir Biomedicine and Genome Center, İzmir, Turkey.
Doğa Eskierİzmir Biomedicine and Genome Center, İzmir, Turkey.
Ahmet Bursalıİzmir Biomedicine and Genome Center, İzmir, Turkey.
Kemal ErginDepartment of Histology and Embryology, Faculty of Medicine, Adnan Menderes University, Aydın, Turkey.
Esra Erdalİzmir Biomedicine and Genome Center, İzmir, Turkey.
Gökhan Karakülahİzmir Biomedicine and Genome Center, İzmir, Turkey.
Izmir University · TRAdnan Menderes University · TRDokuz Eylül University · TRIzmir Kâtip Çelebi University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The generation and use of induced pluripotent stem cells (iPSCs) in order to obtain all differentiated adult cell morphologies without requiring embryonic stem cells is one of the most important discoveries in molecular biology. Among the uses of iPSCs is the generation of neuron cells and organoids to study the biological cues underlying neuronal and brain development, in addition to neurological diseases. These iPSC-derived neuronal differentiation models allow us to examine the gene regulatory factors involved in such processes. Among these regulatory factors are long non-coding RNAs (lncRNAs), genes that are transcribed from the genome and have key biological functions in establishing phenotypes, but are frequently not included in studies focusing on protein coding genes. Here, we provide a comprehensive analysis and overview of the coding and non-coding transcriptome during multiple stages of the iPSC-derived neuronal differentiation process using RNA-seq. We identify previously unannotated lncRNAs

Indexed as

coexpressioniPSC-derived neuronal differentiationlncRNAstranscriptome profilingWGCNA

Identifiers

PMID34970540
PMCPMC8712770
OpenAlexW4200445508

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.