Evidence map›Paper›PMID 34969985›Full record

ArticleNature methods2022

Monitoring protein conformational changes using fluorescent nanoantennas.

Scott G Harroun, Dominic Lauzon, Maximilian C C J C Ebert, Arnaud Desrosiers, Xiaomeng Wang, Alexis Vallée-Bélisle

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Article in Nature methods, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
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  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Scott G HarrounLaboratoire de Biosenseurs & Nanomachines, Département de chimie, Université de Montréal, Montréal, Québec, Canada.ORCID http://orcid.org/0000-0003-3370-5341
Dominic LauzonLaboratoire de Biosenseurs & Nanomachines, Département de chimie, Université de Montréal, Montréal, Québec, Canada.ORCID http://orcid.org/0000-0002-7513-3233
Maximilian C C J C EbertChemical Computing Group ULC, Montréal, Québec, Canada.
Arnaud DesrosiersLaboratoire de Biosenseurs & Nanomachines, Département de chimie, Université de Montréal, Montréal, Québec, Canada.
Xiaomeng WangLaboratoire de Biosenseurs & Nanomachines, Département de chimie, Université de Montréal, Montréal, Québec, Canada.
Alexis Vallée-BélisleLaboratoire de Biosenseurs & Nanomachines, Département de chimie, Université de Montréal, Montréal, Québec, Canada. a.vallee-belisle@umontreal.ca.ORCID http://orcid.org/0000-0002-5009-7715

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Understanding the relationship between protein structural dynamics and function is crucial for both basic research and biotechnology. However, methods for studying the fast dynamics of structural changes are limited. Here, we introduce fluorescent nanoantennas as a spectroscopic technique to sense and report protein conformational changes through noncovalent dye-protein interactions. Using experiments and molecular simulations, we detect and characterize five distinct conformational states of intestinal alkaline phosphatase, including the transient enzyme-substrate complex. We also explored the universality of the nanoantenna strategy with another model protein, Protein G and its interaction with antibodies, and demonstrated a rapid screening strategy to identify efficient nanoantennas. These versatile nanoantennas can be used with diverse dyes to monitor small and large conformational changes, suggesting that they could be used to characterize diverse protein movements or in high-throughput screening applications.

Indexed as

Alkaline PhosphataseAniline CompoundsBiotinDNA, Single-StrandedFluorescent DyesMolecular Docking SimulationMolecular Dynamics SimulationNanostructuresOrganophosphorus CompoundsProtein ConformationProteinsSpectrophotometry, Ultraviolet4-aminophenylphosphateAlkaline PhosphataseAniline CompoundsBiotinDNA, Single-StrandedFluorescent DyesOrganophosphorus CompoundsProteins

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.