Evidence map›Paper›PMID 34969973›Full record

ArticleNature chemical biology2022

Convergent evolution of bacterial ceramide synthesis.

Gabriele Stankeviciute, Peijun Tang, Ben Ashley, Joshua D Chamberlain, Matthew E B Hansen, Aimiyah Coleman, Rachel D'Emilia, Larina Fu, Eric C Mohan, Hung Nguyen and 3 more

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
4.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 78 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. The Evolution of Lipids from Solvents to Substrates.Annual review of biophysics · 2026
    Review
  5. Article
  6. Novel Genomes ofMicroorganisms · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. UncoveringGut microbes · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Iron limitation triggers roseoceramide biosynthesis and membrane remodeling in marine roseobacter.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  18. Review
  19. Review
  20. Substantial contribution ofISME communications · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Gabriele StankeviciuteCenter for Computational and Integrative Biology, Rutgers University-Camden, Camden, NJ, USA.
Peijun TangEast Chem School of Chemistry, University of Edinburgh, Edinburgh, UK.
Ben AshleyEast Chem School of Chemistry, University of Edinburgh, Edinburgh, UK.
Joshua D ChamberlainCenter for Computational and Integrative Biology, Rutgers University-Camden, Camden, NJ, USA.
Matthew E B HansenDepartment of Genetics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, USA.
Aimiyah ColemanCenter for Computational and Integrative Biology, Rutgers University-Camden, Camden, NJ, USA.
Rachel D'EmiliaCenter for Computational and Integrative Biology, Rutgers University-Camden, Camden, NJ, USA.
Larina FuCenter for Computational and Integrative Biology, Rutgers University-Camden, Camden, NJ, USA.
Eric C MohanEast Chem School of Chemistry, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0003-4950-9716
Hung NguyenCenter for Computational and Integrative Biology, Rutgers University-Camden, Camden, NJ, USA.ORCID http://orcid.org/0000-0001-8695-7169
Ziqiang GuanDepartment of Biochemistry, Duke University Medical Center, Durham, NC, USA. ziqiang.guan@duke.edu.ORCID http://orcid.org/0000-0002-8082-3423
Dominic J CampopianoEast Chem School of Chemistry, University of Edinburgh, Edinburgh, UK. Dominic.Campopiano@ed.ac.uk.ORCID http://orcid.org/0000-0001-8573-6735
Eric A KleinCenter for Computational and Integrative Biology, Rutgers University-Camden, Camden, NJ, USA. eric.a.klein@rutgers.edu.ORCID http://orcid.org/0000-0003-3941-6233
Rutgers, The State University of New Jersey · USUniversity of Edinburgh · GBDuke University · USUniversity of Pennsylvania · US

Funding

STEROL LIPIDSU54GM069338 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DENNIS, EDWARD A · 2003 to 2013
$72.2M
Adaptive alterations of lipids in mitis group streptococciR01AI148366 · NIAID · UNIVERSITY OF TEXAS DALLAS · PI GUAN, ZIQIANG, PALMER, KELLI LEA · 2020 to 2024
$2.5M
Biotechnology and Biological Sciences Research Council BB/M010996/1Biotechnology and Biological Sciences Research Council BB/T016841/1NIAID NIH HHS R01 AI148366NIGMS NIH HHS U54 GM069338
6 · The paper itself

Abstract

The bacterial domain produces numerous types of sphingolipids with various physiological functions. In the human microbiome, commensal and pathogenic bacteria use these lipids to modulate the host inflammatory system. Despite their growing importance, their biosynthetic pathway remains undefined since several key eukaryotic ceramide synthesis enzymes have no bacterial homolog. Here we used genomic and biochemical approaches to identify six proteins comprising the complete pathway for bacterial ceramide synthesis. Bioinformatic analyses revealed the widespread potential for bacterial ceramide synthesis leading to our discovery of a Gram-positive species that produces ceramides. Biochemical evidence demonstrated that the bacterial pathway operates in a different order from that in eukaryotes. Furthermore, phylogenetic analyses support the hypothesis that the bacterial and eukaryotic ceramide pathways evolved independently.

Indexed as

CeramidesSphingolipidsBacteriaBiosynthetic PathwaysHumansPhylogenyCeramidesSphingolipids

Identifiers

PMID34969973
PMCPMC8891067
OpenAlexW4200239440

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.