Evidence map›Paper›PMID 34969824›Full record

ArticleGenes & development2022

Transcription factor-mediated intestinal metaplasia and the role of a shadow enhancer.

Harshabad Singh, Davide Seruggia, Shariq Madha, Madhurima Saxena, Ankur K Nagaraja, Zhong Wu, Jin Zhou, Aaron J Huebner, Adrianna Maglieri, Juliette Wezenbeek and 5 more

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Trial
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  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Role of PDGFRANature communications · 2023
    Article
  12. Article
  13. Be like water, my cells: cell plasticity and the art of transformation.Frontiers in cell and developmental biology · 2023
    Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

Harshabad SinghDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.
Davide SeruggiaDivision of Hematology Oncology, Boston Children's Hospital, Boston, Massachusetts 02215, USA.
Shariq MadhaDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.
Madhurima SaxenaDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.
Ankur K NagarajaDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.
Zhong WuDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.
Jin ZhouDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.
Aaron J HuebnerCenter for Regenerative Medicine, Massachusetts General Hospital, Boston, Massachusetts, 02114, USA.
Adrianna MaglieriDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.
Juliette WezenbeekHubretch Institute, Royal Netherlands Academy of Arts and Sciences (KNAW), University Medical Center Utrecht, Utrecht 3584 CT, Netherlands.
Konrad HochedlingerCenter for Regenerative Medicine, Massachusetts General Hospital, Boston, Massachusetts, 02114, USA.ORCID 0000-0001-5811-5386
Stuart H OrkinDepartment of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, USA.ORCID 0000-0002-3523-7687
Adam J BassDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.
Jason L HornickDepartments of Pathology, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts 02115, USA.
Ramesh A ShivdasaniDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts 02215, USA.ORCID 0000-0002-2828-1727
Brigham and Women's Hospital · USDana-Farber Cancer Institute · USMassachusetts General Hospital · USBoston Children's Hospital · USRoyal Netherlands Academy of Arts and Sciences · NL

Funding

Tissue and Pathology ResourcesP50CA127003 · NCI · DANA-FARBER CANCER INST · PI BASS, ADAM JOEL · 2007 to 2023
$33.2M
Transcriptional control and enhancer recruitment in mouse and human intestinal secretory differentiationR01DK082889 · NIDDK · DANA-FARBER CANCER INST · PI Ramesh A Shivdasani · 2010 to 2026
$5.2M
NCI NIH HHS P50 CA127003NIDDK NIH HHS R01 DK082889
6 · The paper itself

Abstract

Barrett's esophagus (BE) and gastric intestinal metaplasia are related premalignant conditions in which areas of human stomach epithelium express mixed gastric and intestinal features. Intestinal transcription factors (TFs) are expressed in both conditions, with unclear causal roles and

Indexed as

Barrett EsophagusTranscription FactorsAnimalsCDX2 Transcription FactorHomeodomain ProteinsMetaplasiaMiceCDX2 Transcription FactorHomeodomain ProteinsTranscription FactorsBarrett's esophagusCDX2gastric intestinal metaplasiaHNF4Atranscriptional control of cell identity

Identifiers

PMID34969824
PMCPMC8763054
OpenAlexW4200082699

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.