Evidence map›Paper›PMID 34968250›Full record

ArticleEpigenomes2021

The Histone H3 K4me3, K27me3, and K27ac Genome-Wide Distributions Are Differently Influenced by Sex in Brain Cortexes and Gastrocnemius of the Alzheimer's Disease PSAPP Mouse Model.

Francesca Casciaro, Giuseppe Persico, Martina Rusin, Stefano Amatori, Claire Montgomery, Jennifer R Rutkowsky, Jon J Ramsey, Gino Cortopassi, Mirco Fanelli, Marco Giorgio

Open access · diamondAbstract read
In one paragraph

Article in Epigenomes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Francesca CasciaroDepartment of Biomedical Sciences, University of Padua, Via Ugo Bassi 58/B, 35131 Padova, Italy.ORCID 0000-0002-1404-6099
Giuseppe PersicoDepartment of Experimental Oncology, IRCCS-European Institute of Oncology, Via Adamello 16, 20139 Milano, Italy.
Martina RusinDepartment of Experimental Oncology, IRCCS-European Institute of Oncology, Via Adamello 16, 20139 Milano, Italy.ORCID 0000-0002-3012-2653
Stefano AmatoriMolecular Pathology Laboratory "PaoLa", Department of Biomolecular Sciences, University of Urbino Carlo Bo, Via Arco d'Augusto 2, 61032 Fano (PU), Italy.
Claire MontgomerySchool of Veterinary Medicine, University of California, Davis, CA 95616, USA.
Jennifer R RutkowskySchool of Veterinary Medicine, University of California, Davis, CA 95616, USA.
Jon J RamseySchool of Veterinary Medicine, University of California, Davis, CA 95616, USA.
Gino CortopassiSchool of Veterinary Medicine, University of California, Davis, CA 95616, USA.
Mirco FanelliMolecular Pathology Laboratory "PaoLa", Department of Biomolecular Sciences, University of Urbino Carlo Bo, Via Arco d'Augusto 2, 61032 Fano (PU), Italy.
Marco GiorgioDepartment of Biomedical Sciences, University of Padua, Via Ugo Bassi 58/B, 35131 Padova, Italy.
University of California, Davis · USUniversity of Urbino · ITUniversity of Padua · ITEuropean Institute of Oncology · IT

Funding

Reversing the epigenetic code of aging through ketogenic dietsP01AG062817 · NIA · UNIVERSITY OF CALIFORNIA AT DAVIS · PI CORTOPASSI, GINO A · 2019 to 2023
$11.4M
A ketogenic longevity diet for resistance to age-related functional decline and Alzheimer's diseaseR56AG057163 · NIA · UNIVERSITY OF CALIFORNIA AT DAVIS · PI CORTOPASSI, GINO A, RAMSEY, JON J. · 2018 to 2018
$783k
NIA NIH HHS 1R56AG057163-01A1NIA NIH HHS P01 AG062817
6 · The paper itself

Abstract

backgroundWomen represent the majority of Alzheimer's disease patients and show typical symptoms. Genetic, hormonal, and behavioral mechanisms have been proposed to explain sex differences in dementia prevalence. However, whether sex differences exist in the epigenetic landscape of neuronal tissue during the progression of the disease is still unknown.

methodsTo investigate the differences of histone H3 modifications involved in transcription, we determined the genome-wide profiles of H3K4me3, H3K27ac, and H3K27me3 in brain cortexes of an Alzheimer mouse model (PSAPP). Gastrocnemius muscles were also tested since they are known to be different in the two sexes and are affected during the disease progression.

resultsCorrelation analysis distinguished the samples based on sex for H3K4me3 and H3K27me3 but not for H3K27ac. The analysis of transcription starting sites (TSS) signal distribution, and analysis of bounding sites revealed that gastrocnemius is more influenced than brain by sex for the three histone modifications considered, exception made for H3K27me3 distribution on the X chromosome which showed sex-related differences in promoters belonging to behavior and cellular or neuronal spheres in mice cortexes.

conclusionsH3K4me3, H3K27ac, and H3K27me3 signals are slightly affected by sex in brain, with the exception of H3K27me3, while a higher number of differences can be found in gastrocnemius.

Indexed as

Alzheimer’s diseasehistone marksPSAPP micesex differences

Identifiers

PMID34968250
PMCPMC8715457
OpenAlexW3214741099

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.