Evidence map›Paper›PMID 34965429›Full record

ArticleCell reports2021

Spatiotemporal localization of proteins in mycobacteria.

Junhao Zhu, Ian D Wolf, Charles L Dulberger, Harim I Won, Jemila C Kester, Julius A Judd, Samantha E Wirth, Ryan R Clark, Yawei Li, Yuan Luo and 5 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. The Many Hosts of Mycobacteria 9 (MHM9): A conference report.Tuberculosis (Edinburgh, Scotland) · 2023
    Article
  13. Review
  14. Vaccines · 2023
    Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Lipid Transport Across Bacterial Membranes.Annual review of cell and developmental biology · 2022
    Review
  20. Types and functions of heterogeneity in mycobacteria.Nature reviews. Microbiology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Junhao ZhuDepartment of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA.
Ian D WolfDepartment of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA.
Charles L DulbergerDepartment of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA.
Harim I WonDepartment of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA.
Jemila C KesterDepartment of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA.
Julius A JuddWadsworth Center, New York State Department of Health, Albany, NY 12208, USA.
Samantha E WirthWadsworth Center, New York State Department of Health, Albany, NY 12208, USA.
Ryan R ClarkWadsworth Center, New York State Department of Health, Albany, NY 12208, USA.
Yawei LiDepartment of Preventive Medicine, Northwestern University, Chicago, IL 60611, USA.
Yuan LuoDepartment of Preventive Medicine, Northwestern University, Chicago, IL 60611, USA.
Todd A GrayWadsworth Center, New York State Department of Health, Albany, NY 12208, USA.
Joseph T WadeWadsworth Center, New York State Department of Health, Albany, NY 12208, USA.
Keith M DerbyshireWadsworth Center, New York State Department of Health, Albany, NY 12208, USA.
Sarah M FortuneDepartment of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA. Electronic address: sfortune@hsph.harvard.edu.
Eric J RubinDepartment of Immunology and Infectious Diseases, Harvard T.H. Chan School of Public Health, Boston, MA 02115, USA. Electronic address: erubin@hsph.harvard.edu.
Harvard University · USNew York State Department of Health · USNorthwestern University · US

Funding

Vulnerabilities in Mycobacterial Cell-Wall BiogenesisP01AI095208 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI SACCHETTINI, JAMES C · 2012 to 2022
$19.8M
Surviving evolution: Short-term adaptations for fitnessP01AI143575 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI SABINE EHRT · 2020 to 2026
$18.2M
A Community Mycobacterial Systems ResourceR01AI097191 · NIAID · WADSWORTH CENTER · PI DERBYSHIRE, KEITH M, FORTUNE, SARAH · 2012 to 2016
$3.2M
NIAID NIH HHS P01 AI095208NIAID NIH HHS P01 AI143575NIAID NIH HHS R01 AI097191
6 · The paper itself

Abstract

Although prokaryotic organisms lack traditional organelles, they must still organize cellular structures in space and time, challenges that different species solve differently. To systematically define the subcellular architecture of mycobacteria, we perform high-throughput imaging of a library of fluorescently tagged proteins expressed in Mycobacterium smegmatis and develop a customized computational pipeline, MOMIA and GEMATRIA, to analyze these data. Our results establish a spatial organization network of over 700 conserved mycobacterial proteins and reveal a coherent localization pattern for many proteins of known function, including those in translation, energy metabolism, cell growth and division, as well as proteins of unknown function. Furthermore, our pipeline exploits morphologic proxies to enable a pseudo-temporal approximation of protein localization and identifies previously uncharacterized cell-cycle-dependent dynamics of essential mycobacterial proteins. Collectively, these data provide a systems perspective on the subcellular organization of mycobacteria and provide tools for the analysis of bacteria with non-standard growth characteristics.

Indexed as

Spatio-Temporal AnalysisBacterial ProteinsCell CycleMolecular ImagingMycobacterium smegmatisOrganellesProtein TransportBacterial Proteinsfluorescent proteinmatrix factorizationmicroscopy image analysismycobacteriaMycobacterium smegmatis

Identifiers

PMID34965429
PMCPMC8861988
OpenAlexW4200367272

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.