Evidence map›Paper›PMID 34965380›Full record

ArticleCell chemical biology2022

Chemoselective restoration of para-azido-phenylalanine at multiple sites in proteins.

Pol Arranz-Gibert, Koen Vanderschuren, Adrian Haimovich, Anushka Halder, Kallol Gupta, Jesse Rinehart, Farren J Isaacs

Abstract read
In one paragraph

Article in Cell chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Tuning protein half-life in mouse using sequence-defined biopolymers functionalized with lipids.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Pol Arranz-GibertDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT, USA; Systems Biology Institute, Yale University, West Haven, CT, USA.
Koen VanderschurenDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT, USA; Systems Biology Institute, Yale University, West Haven, CT, USA.
Adrian HaimovichDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT, USA; Systems Biology Institute, Yale University, West Haven, CT, USA.
Anushka HalderDepartment of Cell Biology, Yale University, New Haven, CT, USA; Nanobiology Institute, Yale University, West Haven, CT, USA.
Kallol GuptaDepartment of Cell Biology, Yale University, New Haven, CT, USA; Nanobiology Institute, Yale University, West Haven, CT, USA.
Jesse RinehartSystems Biology Institute, Yale University, West Haven, CT, USA; Department of Cellular and Molecular Physiology, Yale University, New Haven, CT, USA.
Farren J IsaacsDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT, USA; Systems Biology Institute, Yale University, West Haven, CT, USA; Department of Biomedical Engineering, Yale University, New Haven, CT, USA. Electronic address: farren.isaacs@yale.edu.

Funding

Understanding organization of membrane proteins and lipids through lipid vesicle native mass spectrometryR01GM141192 · NIGMS · YALE UNIVERSITY · PI GUPTA, KALLOL · 2021 to 2025
$1.9M
Expanding the genetic code with phosphotyrosine and phosphothreonineR01GM125951 · NIGMS · YALE UNIVERSITY · PI ISAACS, FARREN J., RINEHART, JESSE · 2018 to 2021
$1.2M
NIGMS NIH HHS R01 GM125951NIGMS NIH HHS R01 GM141192
6 · The paper itself

Abstract

The site-specific incorporation of nonstandard amino acids (nsAAs) during translation has expanded the chemistry and function of proteins. The nsAA para-azido-phenylalanine (pAzF) encodes a biorthogonal chemical moiety that facilitates "click" reactions to attach diverse chemical groups for protein functionalization. However, the azide moiety is unstable in physiological conditions and is reduced to para-amino-phenylalanine (pAF). Azide reduction decreases the yield of pAzF residues in proteins to 50%-60% per azide and limits protein functionalization by click reactions. Here, we describe the use of a pH-tunable diazotransfer reaction that converts pAF to pAzF at >95% efficiency in proteins. The method selectively restores pAzF at multiple sites per protein without introducing off-target modifications. This work addresses a key limitation in the production of pAzF-containing proteins by restoring azides for multi-site functionalization with diverse chemical moieties, setting the stage for the production of genetically encoded biomaterials with broad applications in biotherapeutics, materials science, and biotechnology.

Indexed as

AzidesPhenylalanineAmino AcidsBiocompatible MaterialsClick ChemistryProteinsAmino AcidsAzidesBiocompatible MaterialsPhenylalanineProteinsbiomaterialsclick-chemistryconjugationgenetic code expansiongenomically recoded organismsnon-standard amino acidspara-azido-phenylalanineprotein engineering

Identifiers

PMID34965380
PMCPMC10173106

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.