Evidence map›Paper›PMID 34963688›Full record

ArticleLaboratory investigation; a journal of technical methods and pathology2022

A generative adversarial approach to facilitate archival-quality histopathologic diagnoses from frozen tissue sections.

Kianoush Falahkheirkhah, Tao Guo, Michael Hwang, Pheroze Tamboli, Christopher G Wood, Jose A Karam, Kanishka Sircar, Rohit Bhargava

Open access · greenAbstract read
In one paragraph

Article in Laboratory investigation; a journal of technical methods and pathology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.8field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Kianoush FalahkheirkhahDepartment of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.ORCID 0000-0003-2781-2693
Tao GuoDepartment of Pathology, University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Michael HwangDepartment of Pathology and Laboratory Medicine, Indiana University School of Medicine, Indianapolis, IN, USA.
Pheroze TamboliDepartment of Pathology, University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Christopher G WoodDepartment of Urology, University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Jose A KaramDepartment of Urology, University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Kanishka SircarDepartment of Pathology, University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Rohit BhargavaDepartment of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA. rxb@illinois.edu.ORCID 0000-0001-7360-994X
The University of Texas MD Anderson Cancer Center · USUniversity of Illinois Urbana-Champaign · USIndiana University School of Medicine

Funding

Real time colon histopathology by infrared spectroscopic imagingR01CA260830 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI BHARGAVA, ROHIT · 2021 to 2025
$2.3M
NCI NIH HHS R01 CA260830
6 · The paper itself

Abstract

In clinical diagnostics and research involving histopathology, formalin-fixed paraffin-embedded (FFPE) tissue is almost universally favored for its superb image quality. However, tissue processing time (>24 h) can slow decision-making. In contrast, fresh frozen (FF) processing (<1 h) can yield rapid information but diagnostic accuracy is suboptimal due to lack of clearing, morphologic deformation and more frequent artifacts. Here, we bridge this gap using artificial intelligence. We synthesize FFPE-like images ("virtual FFPE") from FF images using a generative adversarial network (GAN) from 98 paired kidney samples derived from 40 patients. Five board-certified pathologists evaluated the results in a blinded test. Image quality of the virtual FFPE data was assessed to be high and showed a close resemblance to real FFPE images. Clinical assessments of disease on the virtual FFPE images showed a higher inter-observer agreement compared to FF images. The nearly instantaneously generated virtual FFPE images can not only reduce time to information but can facilitate more precise diagnosis from routine FF images without extraneous costs and effort.

Indexed as

FormaldehydeGene Expression ProfilingArtificial IntelligenceHumansParaffin EmbeddingTissue FixationFormaldehyde

Identifiers

PMID34963688
PMCPMC9050807
OpenAlexW3195963987

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.