Evidence map›Paper›PMID 34962936›Full record

ArticlePloS one2021

A mathematical model for the dependence of keratin aggregate formation on the quantity of mutant keratin expressed in EGFP-K14 R125P keratinocytes.

Marcos Gouveia, Tjaša Sorčan, Špela Zemljič-Jokhadar, Rui D M Travasso, Mirjana Liović

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Marcos GouveiaDepartment of Physics, CFisUC, Center of Physics of the University of Coimbra, University of Coimbra, Coimbra, Portugal.ORCID 0000-0002-2552-9993
Tjaša SorčanAdriaBio Llc, Postojna, Slovenia.
Špela Zemljič-JokhadarFaculty of Medicine, Institute for Biophysics, University of Ljubljana, Ljubljana, Slovenia.
Rui D M TravassoDepartment of Physics, CFisUC, Center of Physics of the University of Coimbra, University of Coimbra, Coimbra, Portugal.ORCID 0000-0001-6078-0721
Mirjana LiovićFaculty of Medicine, Medical Center for Molecular Biology, Institute for Biochemistry and Molecular Genetics, University of Ljubljana, Ljubljana, Slovenia.
University of Coimbra · PTUniversity of Ljubljana · SIAnimal Hospital Postojna · SI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We examined keratin aggregate formation and the possible mechanisms involved. With this aim, we observed the effect that different ratios between mutant and wild-type keratins expressed in cultured keratinocytes may have on aggregate formation in vitro, as well as how keratin aggregate formation affects the mechanical properties of cells at the cell cortex. To this end we prepared clones with expression rates as close as possible to 25%, 50% and 100% of the EGFP-K14 proteins (either WT or R125P and V270M mutants). Our results showed that only in the case of the 25% EGFP-K14 R125P mutant significant differences could be seen. Namely, we observed in this case the largest accumulation of keratin aggregates and a significant reduction in cell stiffness. To gain insight into the possible mechanisms behind this observation, we extended our previous mathematical model of keratin dynamics by implementing a more complex reaction network that considers the coexistence of wild-type and mutant keratins in the cell. The new model, consisting of a set of coupled, non-linear, ordinary differential equations, allowed us to draw conclusions regarding the relative amounts of intermediate filaments and aggregates in cells, and suggested that aggregate formation by asymmetric binding between wild-type and mutant keratins could explain the data obtained on cells grown in culture.

Indexed as

Protein AggregatesCell LineComputer SimulationFluorescent DyesGreen Fluorescent ProteinsHumansKeratinocytesKeratinsModels, BiologicalMutant ProteinsProteasome Inhibitorsenhanced green fluorescent proteinFluorescent DyesGreen Fluorescent ProteinsKeratinsMutant ProteinsProteasome InhibitorsProtein Aggregates

Identifiers

PMID34962936
PMCPMC8714116
OpenAlexW4200578714

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.