Evidence map›Paper›PMID 34961896›Full record

ArticleArchives of microbiology2021

Metagenomic landscape of taxonomy, metabolic potential and resistome of Sardinella longiceps gut microbiome.

Tina Kollannoor Johny, Rinu Madhu Puthusseri, Sarita Ganapathy Bhat

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Comparative genome analysis of the genusFrontiers in microbiology · 2023
    Article
  7. Article
  8. Scientometric Analysis of Hiking Tourism and Its Relevance for Wellbeing and Knowledge Management.International journal of environmental research and public health · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Tina Kollannoor JohnyDepartment of Biotechnology, Cochin University of Science and Technology, Kalamassery, Cochin, Kerala, 682022, India.ORCID http://orcid.org/0000-0001-6106-9413
Rinu Madhu PuthusseriDepartment of Biotechnology, Cochin University of Science and Technology, Kalamassery, Cochin, Kerala, 682022, India.ORCID http://orcid.org/0000-0002-4708-7890
Sarita Ganapathy BhatDepartment of Biotechnology, Cochin University of Science and Technology, Kalamassery, Cochin, Kerala, 682022, India. saritagbhat@gmail.com.ORCID http://orcid.org/0000-0002-4500-3040
Cochin University of Science and Technology · IN

Funding

centre for marine living resources & ecology- ministry of earth sciences, government of india MOES/10-MLR/2/2007centre for marine living resources & ecology- ministry of earth sciences, government of india MOES/10-MLRTD/03/2013
6 · The paper itself

Abstract

Fish gut microbiota, encompassing a colossal reserve of microbes represents a dynamic ecosystem, influenced by a myriad of environmental and host factors. The current study presents a comprehensive insight into Sardinella longiceps gut microbiome using whole metagenome shotgun sequencing. Taxonomic profiling identified the predominance of phylum Proteobacteria, comprising of Photobacterium, Vibrio and Shewanella sp. Functional annotation revealed the dominance of Clustering based subsystems, Carbohydrate, and Amino acids and derivatives. Analysis of Virulence, disease and defense subsystem identified genes conferring resistance to antibiotics and toxic compounds, like multidrug resistance efflux pumps and resistance genes for fluoroquinolones and heavy metals like cobalt, zinc, cadmium and copper. The presence of overlapping genetic mechanisms of resistance to antibiotics and heavy metals, like the efflux pumps is a serious cause of concern as it is likely to aggravate co-selection pressure, leading to an increased dissemination of these resistance genes to fish and humans.

Indexed as

Gastrointestinal MicrobiomeMicrobiotaAnimalsAnti-Bacterial AgentsFishesHumansMetagenomeMetagenomicsAnti-Bacterial AgentsAntibiotic resistanceHeavy metal resistanceMetagenomicsSardinella longicepsTaxonomy

Identifiers

PMID34961896
OpenAlexW4200124217

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.