Evidence map›Paper›PMID 34960681›Full record

ArticleViruses2021

Novel Picornavirus Detected in Wild Deer: Identification, Genomic Characterisation, and Prevalence in Australia.

Jose L Huaman, Carlo Pacioni, Subir Sarker, Mark Doyle, David M Forsyth, Anthony Pople, Teresa G Carvalho, Karla J Helbig

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 18 citations in OpenAlex.

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  12. First Evidence ofFrontiers in cellular and infection microbiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Jose L HuamanDepartment of Physiology, Anatomy, and Microbiology, School of Life Sciences, La Trobe University, Melbourne, VIC 3086, Australia.ORCID 0000-0003-1321-887X
Carlo PacioniDepartment of Environment, Land, Water, and Planning, Arthur Rylah Institute for Environmental Research, Heidelberg, VIC 3084, Australia.
Subir SarkerDepartment of Physiology, Anatomy, and Microbiology, School of Life Sciences, La Trobe University, Melbourne, VIC 3086, Australia.ORCID 0000-0002-2685-8377
Mark DoyleSouth East Local Land Services, Bega, NSW 2550, Australia.
David M ForsythVertebrate Pest Research Unit, Department of Primary Industries, Orange Agricultural Institute, Orange, NSW 2800, Australia.
Anthony PopleDepartment of Agriculture and Fisheries, Invasive Plants & Animals Research, Biosecurity Queensland, Ecosciences Precinct, Brisbane, QLD 4102, Australia.
Teresa G CarvalhoDepartment of Physiology, Anatomy, and Microbiology, School of Life Sciences, La Trobe University, Melbourne, VIC 3086, Australia.ORCID 0000-0002-4947-371X
Karla J HelbigDepartment of Physiology, Anatomy, and Microbiology, School of Life Sciences, La Trobe University, Melbourne, VIC 3086, Australia.ORCID 0000-0001-6306-2821
La Trobe University · AUArthur Rylah Institute for Environmental Research · AUDepartment of Primary Industries · AUNew South Wales Department of Primary Industries · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The use of high-throughput sequencing has facilitated virus discovery in wild animals and helped determine their potential threat to humans and other animals. We report the complete genome sequence of a novel picornavirus identified by next-generation sequencing in faeces from Australian fallow deer. Genomic analysis revealed that this virus possesses a typical picornavirus-like genomic organisation of 7554 nt with a single open reading frame (ORF) encoding a polyprotein of 2225 amino acids. Based on the amino acid identity comparison and phylogenetic analysis of the P1, 2C, 3CD, and VP1 regions, this novel picornavirus was closely related to but distinct from known bopiviruses detected to date. This finding suggests that deer/bopivirus could belong to a novel species within the genus

Indexed as

AnimalsAnimals, WildAustraliaCattleCattle DiseasesDeerFecesGenome, ViralHigh-Throughput Nucleotide SequencingPhylogenyPicornaviridaePicornaviridae InfectionsPrevalenceRNA, ViralRNA, ViralBopiviruscomplete genomedeerphylogeneticsviral isolationviral metagenomics

Identifiers

PMID34960681
PMCPMC8706930
OpenAlexW3215616701

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.