Evidence map›Paper›PMID 34957366›Full record

ArticleACS omega2021

Aptamer Sandwich Assay for the Detection of SARS-CoV-2 Spike Protein Antigen.

Marketa Svobodova, Vasso Skouridou, Miriam Jauset-Rubio, Irene Viéitez, Alberto Fernández-Villar, Jorge Julio Cabrera Alvargonzalez, Eva Poveda, Clara Benavent Bofill, Teresa Sans, Abdulaziz Bashammakh and 2 more

Abstract read
In one paragraph

Article in ACS omega, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Marketa SvobodovaINTERFIBIO Research Group, Departament d'Enginyeria Química, Universitat Rovira i Virgili, Avinguda Països Catalans 26, Tarragona 43007, Spain.
Vasso SkouridouINTERFIBIO Research Group, Departament d'Enginyeria Química, Universitat Rovira i Virgili, Avinguda Països Catalans 26, Tarragona 43007, Spain.ORCID https://orcid.org/0000-0002-9712-5429
Miriam Jauset-RubioINTERFIBIO Research Group, Departament d'Enginyeria Química, Universitat Rovira i Virgili, Avinguda Països Catalans 26, Tarragona 43007, Spain.
Irene ViéitezRare Diseases & Pediatric Medicine Research Group, Galicia Sur Health Research Institute (IIS Galicia Sur), SERGAS-Uvigo, Vigo 36213, Spain.ORCID https://orcid.org/0000-0001-9241-0207
Alberto Fernández-VillarPneumology Service, Galicia Sur Health Research Institute (IIS Galicia Sur), SERGAS-Uvigo, Vigo 36213, Spain.
Jorge Julio Cabrera AlvargonzalezMicrobiology Service, Galicia Sur Health Research Institute (IIS Galicia Sur). SERGAS-UVigo, Vigo 36213, Spain.
Eva PovedaGroup of Virology and Pathogenesis, Galicia Sur Health Research Institute (IIS Galicia Sur)-Complexo Hospitalario Universitario de Vigo, SERGAS-UVigo, Vigo 36213, Spain.
Clara Benavent BofillLaboratori Clinic ICS Camp de Tarragona, Hospital Universitari de Tarragona Joan XXIII, Avda. Dr. Mallafré Guasch, 4, Tarragona 43007, Spain.
Teresa SansLaboratori Clinic ICS Camp de Tarragona, Hospital Universitari de Tarragona Joan XXIII, Avda. Dr. Mallafré Guasch, 4, Tarragona 43007, Spain.
Abdulaziz BashammakhDepartment of Chemistry, Faculty of Science, King Abdulaziz University, Jeddah 80215, Kingdom of Saudi Arabia.
Abdulrahman O AlyoubiDepartment of Chemistry, Faculty of Science, King Abdulaziz University, Jeddah 80215, Kingdom of Saudi Arabia.
Ciara K O'SullivanINTERFIBIO Research Group, Departament d'Enginyeria Química, Universitat Rovira i Virgili, Avinguda Països Catalans 26, Tarragona 43007, Spain.ORCID https://orcid.org/0000-0003-2603-2230

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The novel severe acute respiratory syndrome coronavirus (SARS-CoV-2) emerged at the end of 2019, resulting in the ongoing COVID-19 pandemic. The high transmissibility of the virus and the substantial number of asymptomatic individuals have led to an exponential rise in infections worldwide, urgently requiring global containment strategies. Reverse transcription-polymerase chain reaction is the gold standard for the detection of SARS-CoV-2 infections. Antigen tests, targeting the spike (S) or nucleocapsid (N) viral proteins, are considered as complementary tools. Despite their shortcomings in terms of sensitivity and specificity, antigen tests could be deployed for the detection of potentially contagious individuals with high viral loads. In this work, we sought to develop a sandwich aptamer-based assay for the detection of the S protein of SARS-CoV-2. A detailed study on the binding properties of aptamers to the receptor-binding domain of the S protein in search of aptamer pairs forming a sandwich is presented. Screening of aptamer pairs and optimization of assay conditions led to the development of a laboratory-based sandwich assay able to detect 21 ng/mL (270 pM) of the protein with negligible cross-reactivity with the other known human coronaviruses. The detection of 375 pg of the protein in viral transport medium demonstrates the compatibility of the assay with clinical specimens. Finally, successful detection of the S antigen in nasopharyngeal swab samples collected from suspected patients further establishes the suitability of the assay for screening purposes as a complementary tool to assist in the control of the pandemic.

Identifiers

PMID34957366
PMCPMC8691202

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.