Evidence map›Paper›PMID 34951647›Full record

ArticleNeuro-oncology2022

ATRX loss promotes immunosuppressive mechanisms in IDH1 mutant glioma.

Chengchen Hu, Kimberly Wang, Ceylan Damon, Yi Fu, Tengjiao Ma, Lisa Kratz, Bachchu Lal, Mingyao Ying, Shuli Xia, Daniel P Cahill and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Neuro-oncology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 1 pooled it
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 1 synthesis or guideline pooled it, 48 citations in OpenAlex.

  1. Pooled it
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  20. Mutant ATRX: pathogenesis of ATRX syndrome and cancer.Frontiers in molecular biosciences · 2024
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Chengchen HuHugo W. Moser Research Institute at Kennedy Krieger, Baltimore, Maryland, USA.
Kimberly WangHugo W. Moser Research Institute at Kennedy Krieger, Baltimore, Maryland, USA.
Ceylan DamonHugo W. Moser Research Institute at Kennedy Krieger, Baltimore, Maryland, USA.
Yi FuHugo W. Moser Research Institute at Kennedy Krieger, Baltimore, Maryland, USA.
Tengjiao MaHugo W. Moser Research Institute at Kennedy Krieger, Baltimore, Maryland, USA.
Lisa KratzDepartment of Neurology, The Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Bachchu LalHugo W. Moser Research Institute at Kennedy Krieger, Baltimore, Maryland, USA.
Mingyao YingHugo W. Moser Research Institute at Kennedy Krieger, Baltimore, Maryland, USA.
Shuli XiaHugo W. Moser Research Institute at Kennedy Krieger, Baltimore, Maryland, USA.
Daniel P CahillDepartment of Neurosurgery, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts, USA.ORCID 0000-0003-2552-6546
Christopher M JacksonDepartment of Neurosurgery, The Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Michael LimDepartment of Neurosurgery, The Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
John LaterraHugo W. Moser Research Institute at Kennedy Krieger, Baltimore, Maryland, USA.
Yunqing LiHugo W. Moser Research Institute at Kennedy Krieger, Baltimore, Maryland, USA.
Kennedy Krieger Institute · USJohns Hopkins University · USHarvard University · US

Funding

Targeting the Vasular SystemP50CA165962 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI WENDY Beth LONDON · 2013 to 2026
$33.5M
Targeting the neuronal microenvironment in glioblastomaU19CA264504 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI Tracy T Batchelor · 2021 to 2026
$6.4M
Chromatin Modifications in GBM-Propagating CellsR01NS096754 · NINDS · HUGO W. MOSER RES INST KENNEDY KRIEGER · PI LATERRA, JOHN J · 2017 to 2021
$2.2M
Targeting Hyaluronan-mediated Motility Receptor in Glioblastoma Stem CellsR01NS099460 · NINDS · HUGO W. MOSER RES INST KENNEDY KRIEGER · PI YING, MINGYAO · 2017 to 2021
$1.8M
Tet2 regulation and function in glioma cell phenotype reprogrammingR01NS110087 · NINDS · HUGO W. MOSER RES INST KENNEDY KRIEGER · PI LATERRA, JOHN J · 2019 to 2023
$1.8M
NCI NIH HHS P50 CA165962NCI NIH HHS U19 CA264504NINDS NIH HHS R01 NS096754NINDS NIH HHS R01 NS099460NINDS NIH HHS R01 NS110087
6 · The paper itself

Abstract

backgroundATRX inactivation occurs with IDH1R132H and p53 mutations in over 80% of Grades II/III astrocytomas. It is believed that ATRX loss contributes to oncogenesis by dysregulating epigenetic and telomere mechanisms but effects on anti-glioma immunity have not been explored. This paper examines how ATRX loss contributes to the malignant and immunosuppressive phenotypes of IDH1R132H/p53mut glioma cells and xenografts.

methodsIsogenic astrocytoma cells (+/-IDH1R132H/+/-ATRXloss) were established in p53mut astrocytoma cell lines using lentivirus encoding doxycycline-inducible IDH1R132H, ATRX shRNA, or Lenti-CRISPR/Cas9 ATRX. Effects of IDH1R132H+/-ATRXloss on cell migration, growth, DNA repair, and tumorigenicity were evaluated by clonal growth, transwell and scratch assays, MTT, immunofluorence and immunoblotting assays, and xenograft growth. Effects on the expression and function of modulators of the immune microenvironment were quantified by qRT-PCR, immunoblot, T-cell function, macrophage polarization, and flow cytometry assays. Pharmacologic inhibitors were used to examine epigenetic drivers of the immunosuppressive transcriptome of IDH1R132H/p53mut/ATRXloss cells.

resultsAdding ATRX loss to the IDH1R132H/p53mut background promoted astrocytoma cell aggressiveness, induced expression of BET proteins BRD3/4 and an immune-suppressive transcriptome consisting of up-regulated immune checkpoints (e.g., PD-L1, PD-L2) and altered cytokine/chemokine profiles (e.g., IL33, CXCL8, CSF2, IL6, CXCL9). ATRX loss enhanced the capacity of IDH1R132H/p53mut cells to induce T-cell apoptosis, tumorigenic/anti-inflammatory macrophage polarization and Treg infiltration. The transcriptional and biological immune-suppressive responses to ATRX loss were enhanced by temozolomide and radiation and abrogated by pharmacologic BET inhibition.

conclusionsATRX loss activates a BRD-dependent immune-suppressive transcriptome and immune escape mechanism in IDH1R132H/p53mut astrocytoma cells.

Indexed as

AstrocytomaBrain NeoplasmsGliomaCarcinogenesisHumansIsocitrate DehydrogenaseMutationTumor MicroenvironmentX-linked Nuclear ProteinATRX protein, humanIDH1 protein, humanIsocitrate DehydrogenaseX-linked Nuclear ProteinATRX lossBRD-dependent immune-suppressive transcriptomeglioma immune microenvironmentIDH1 mutant astrocytoma

Identifiers

PMID34951647
PMCPMC9159463
OpenAlexW4200467940

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.