Evidence map›Paper›PMID 34949832›Full record

ArticleNature immunology2022

Aging disrupts circadian gene regulation and function in macrophages.

Eran Blacher, Connie Tsai, Lev Litichevskiy, Zohar Shipony, Chinyere Agbaegbu Iweka, Kai Markus Schneider, Bayarsaikhan Chuluun, H Craig Heller, Vilas Menon, Christoph A Thaiss and 1 more

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 112 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
112citing papers in PubMed, 1 pooled it
8.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

112 citing papers in PubMed, 1 synthesis or guideline pooled it, 154 citations in OpenAlex.

  1. Pooled it
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  16. Photothermal-Immunomodulatory Hydrogel Reinforced by TiAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  17. Review
  18. Article
  19. Quantifying Information Exchange Between Cells in Inflammaging.Bioengineering (Basel, Switzerland) · 2026
    Article
  20. Review

52 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Eran Blacher *Department of Neurology & Neurological Sciences, Stanford School of Medicine, Stanford, CA, USA.ORCID http://orcid.org/0000-0003-3207-0153
Connie Tsai *Department of Neurology & Neurological Sciences, Stanford School of Medicine, Stanford, CA, USA.
Lev Litichevskiy *Department of Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-0510-4509
Zohar ShiponyDepartment of Genetics, Stanford University, Stanford, CA, USA.
Chinyere Agbaegbu IwekaDepartment of Neurology & Neurological Sciences, Stanford School of Medicine, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-9228-2436
Kai Markus SchneiderDepartment of Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID http://orcid.org/0000-0002-0047-3794
Bayarsaikhan ChuluunDepartment of Biology, Stanford University, Stanford, CA, USA.
H Craig HellerDepartment of Biology, Stanford University, Stanford, CA, USA.
Vilas MenonCenter for Translational and Computational Neuro-immunology, Department of Neurology, Columbia University Medical Center, New York, NY, USA.
Christoph A ThaissDepartment of Microbiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA. thaiss@pennmedicine.upenn.edu.ORCID http://orcid.org/0000-0001-8226-7718
Katrin I AndreassonDepartment of Neurology & Neurological Sciences, Stanford School of Medicine, Stanford, CA, USA. kandreas@stanford.edu.ORCID http://orcid.org/0000-0001-8391-4155
Stanford Medicine · USStanford University · USUniversity of Pennsylvania · USColumbia University Irving Medical Center · USNeurosciences Institute · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007170 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BRASS, LAWRENCE F · 1985 to 2022
$54.0M
VIRAL VECTOR COREP30DK019525 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI Patrick Seale · 1986 to 2026
$48.3M
Stanford Alzheimer's Disease Research CenterAdmin Supp: Developing iPSC models for AD and PDP30AG066515 · NIA · STANFORD UNIVERSITY · PI Michael D Greicius · 2020 to 2026
$29.0M
Training Program in Computational GenomicsT32HG000046 · NHGRI · UNIVERSITY OF PENNSYLVANIA · PI JUNHYONG KIM, Mingyao Li · 1999 to 2026
$9.5M
Working Memory in Parkinson Disease: A Cognitive & Systems Neuroscience ApproachP50AG047366 · NIA · STANFORD UNIVERSITY · PI GREICIUS, MICHAEL D · 2015 to 2019
$7.9M
A conserved function of amyloid proteins in host-microbiome interactionsDP2AG067492 · NIA · UNIVERSITY OF PENNSYLVANIA · PI THAISS, CHRISTOPH ALEXANDER · 2019 to 2019
$2.4M
Targeting the kynurenine pathway in Alzheimer's diseaseR01AG048232 · NIA · STANFORD UNIVERSITY · PI ANDREASSON, KATRIN I. · 2014 to 2018
$2.4M
Regulation of immune cell metabolism in aging and Alzheimer's disease: role of the kynurenine pathwayRF1AG058047 · NIA · STANFORD UNIVERSITY · PI ANDREASSON, KATRIN I. · 2017 to 2017
$2.0M
Modulating the post-stroke inflammatory response to improve outcome in models of cerebral ischemiaR01NS100180 · NINDS · STANFORD UNIVERSITY · PI ANDREASSON, KATRIN I. · 2018 to 2021
$1.8M
High Throughput DNA Sequencer UpgradeS10OD018220 · OD · STANFORD UNIVERSITY · PI COLLER, JOHN · 2014 to 2014
$596k
BD Canto II RUO CytometerS10RR027431 · NCRR · STANFORD UNIVERSITY · PI NOLAN, GARRY P · 2010 to 2010
$236k
NCRR NIH HHS S10 RR027431NHGRI NIH HHS T32 HG000046NIA NIH HHS DP2 AG067492NIA NIH HHS P30 AG066515NIA NIH HHS P50 AG047366NIA NIH HHS R01 AG048232NIA NIH HHS RF1 AG058047NIDDK NIH HHS P30 DK019525NIGMS NIH HHS T32 GM007170NIH HHS S10 OD018220NINDS NIH HHS R01 NS100180
6 · The paper itself

Abstract

Aging is characterized by an increased vulnerability to infection and the development of inflammatory diseases, such as atherosclerosis, frailty, cancer and neurodegeneration. Here, we find that aging is associated with the loss of diurnally rhythmic innate immune responses, including monocyte trafficking from bone marrow to blood, response to lipopolysaccharide and phagocytosis. This decline in homeostatic immune responses was associated with a striking disappearance of circadian gene transcription in aged compared to young tissue macrophages. Chromatin accessibility was significantly greater in young macrophages than in aged macrophages; however, this difference did not explain the loss of rhythmic gene transcription in aged macrophages. Rather, diurnal expression of Kruppel-like factor 4 (Klf4), a transcription factor (TF) well established in regulating cell differentiation and reprogramming, was selectively diminished in aged macrophages. Ablation of Klf4 expression abolished diurnal rhythms in phagocytic activity, recapitulating the effect of aging on macrophage phagocytosis. Examination of individuals harboring genetic variants of KLF4 revealed an association with age-dependent susceptibility to death caused by bacterial infection. Our results indicate that loss of rhythmic Klf4 expression in aged macrophages is associated with disruption of circadian innate immune homeostasis, a mechanism that may underlie age-associated loss of protective immune responses.

Indexed as

AgingAnimalsAtherosclerosisCell DifferentiationCircadian ClocksGene Expression RegulationImmunity, InnateInflammationKruppel-Like Factor 4Kruppel-Like Transcription FactorsMacrophagesMaleMiceMice, Inbred C57BLMonocytesPhagocytosisKruppel-Like Factor 4Kruppel-Like Transcription Factors

Identifiers

PMID34949832
PMCPMC9704320
OpenAlexW4200193503

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.