Evidence map›Paper›PMID 34949828›Full record

ArticleNature microbiology2022

Identification of structurally diverse menaquinone-binding antibiotics with in vivo activity against multidrug-resistant pathogens.

Lei Li, Bimal Koirala, Yozen Hernandez, Logan W MacIntyre, Melinda A Ternei, Riccardo Russo, Sean F Brady

Open access · greenAbstract read
In one paragraph

Article in Nature microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Hijacking the Electron Train: Menaquinone-Binding Antimicrobial Peptides.Chembiochem : a European journal of chemical biology · 2025
    Review
  3. Fighting Antimicrobial Resistance: Innovative Drugs in Antibacterial Research.Angewandte Chemie (International ed. in English) · 2025
    Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. Article
  14. Modern Trends in Natural Antibiotic Discovery.Life (Basel, Switzerland) · 2023
    Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Lei LiLaboratory of Genetically Encoded Small Molecules, The Rockefeller University, New York, NY, USA.
Bimal KoiralaLaboratory of Genetically Encoded Small Molecules, The Rockefeller University, New York, NY, USA.ORCID http://orcid.org/0000-0003-1806-7935
Yozen HernandezLaboratory of Genetically Encoded Small Molecules, The Rockefeller University, New York, NY, USA.ORCID http://orcid.org/0000-0003-3349-8856
Logan W MacIntyreLaboratory of Genetically Encoded Small Molecules, The Rockefeller University, New York, NY, USA.
Melinda A TerneiLaboratory of Genetically Encoded Small Molecules, The Rockefeller University, New York, NY, USA.ORCID http://orcid.org/0000-0002-5693-9944
Riccardo RussoDepartment of Medicine, Center for Emerging and Re-emerging Pathogens, Rutgers University-New Jersey Medical School, Newark, NJ, USA.
Sean F BradyLaboratory of Genetically Encoded Small Molecules, The Rockefeller University, New York, NY, USA. sbrady@rockefeller.edu.ORCID http://orcid.org/0000-0001-5967-8586
Rockefeller University · USRutgers, The State University of New Jersey · US

Funding

Therapeutics for drug-resistant bacteria: aryl myxopyronins and arylalkylcarboxamido phloroglucinolsU19AI142731 · NIAID · HACKENSACK UNIVERSITY MEDICAL CENTER · PI DICK, THOMAS · 2019 to 2023
$33.9M
Discovery of Antibiotics from Soil Microbiomes Using MetagenomicsR35GM122559 · NIGMS · ROCKEFELLER UNIVERSITY · PI SEAN F BRADY · 2017 to 2026
$4.7M
NIAID NIH HHS U19 AI142731NIGMS NIH HHS R35 GM122559
6 · The paper itself

Abstract

The emergence of multidrug-resistant bacteria poses a threat to global health and necessitates the development of additional in vivo active antibiotics with diverse modes of action. Directly targeting menaquinone (MK), which plays an important role in bacterial electron transport, is an appealing, yet underexplored, mode of action due to a dearth of MK-binding molecules. Here we combine sequence-based metagenomic mining with a motif search of bioinformatically predicted natural product structures to identify six biosynthetic gene clusters that we predicted encode MK-binding antibiotics (MBAs). Their predicted products (MBA1-6) were rapidly accessed using a synthetic bioinformatic natural product approach, which relies on bioinformatic structure prediction followed by chemical synthesis. Among these six structurally diverse MBAs, four make up two new MBA structural families. The most potent member of each new family (MBA3, MBA6) proved effective at treating methicillin-resistant Staphylococcus aureus infection in a murine peritonitis-sepsis model. The only conserved feature present in all MBAs is the sequence 'GXLXXXW', which we propose represents a minimum MK-binding motif. Notably, we found that a subset of MBAs were active against Mycobacterium tuberculosis both in vitro and in macrophages. Our findings suggest that naturally occurring MBAs are a structurally diverse and untapped class of mechanistically interesting, in vivo active antibiotics.

Indexed as

AnimalsAnti-Bacterial AgentsDrug Resistance, Multiple, BacterialFemaleHumansMacrophagesMetagenomicsMethicillin-Resistant Staphylococcus aureusMiceMicrobial Sensitivity TestsMycobacterium tuberculosisPeritonitisStaphylococcal InfectionsVitamin K 2Anti-Bacterial AgentsVitamin K 2

Identifiers

PMID34949828
PMCPMC8732328
OpenAlexW4200085694

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.