Evidence map›Paper›PMID 34946848›Full record

ArticleGenes2021

Rare Pathogenic Variants in Genes Implicated in Glutamatergic Neurotransmission Pathway Segregate with Schizophrenia in Pakistani Families.

Ambrin Fatima, Uzma Abdullah, Muhammad Farooq, Yuan Mang, Mana M Mehrjouy, Maria Asif, Zafar Ali, Niels Tommerup, Shahid M Baig

Open access · goldAbstract read
In one paragraph

Article in Genes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Journal of psychiatry & neuroscience : JPN
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Ambrin FatimaNational Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad 38000, Pakistan.
Uzma AbdullahNational Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad 38000, Pakistan.ORCID 0000-0002-7168-8266
Muhammad FarooqDepartment of Cellular and Molecular Medicine, University of Copenhagen, 2200 Copenhagen, Denmark.
Yuan MangDepartment of Cellular and Molecular Medicine, University of Copenhagen, 2200 Copenhagen, Denmark.
Mana M MehrjouyDepartment of Cellular and Molecular Medicine, University of Copenhagen, 2200 Copenhagen, Denmark.
Maria AsifNational Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad 38000, Pakistan.
Zafar AliDepartment of Cellular and Molecular Medicine, University of Copenhagen, 2200 Copenhagen, Denmark.ORCID 0000-0002-2389-3337
Niels TommerupDepartment of Cellular and Molecular Medicine, University of Copenhagen, 2200 Copenhagen, Denmark.
Shahid M BaigNational Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad 38000, Pakistan.
University of Copenhagen · DKAga Khan University · PKNational Institute for Biotechnology and Genetic Engineering · PK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Schizophrenia is a disabling neuropsychiatric disorder of adulthood onset with high heritability. Worldwide collaborations have identified an association of ~270 common loci, with small individual effects and hence weak clinical implications. The recent technological feasibility of exome sequencing enables the identification of rare variants of high penetrance that refine previous findings and improve risk assessment and prognosis. We recruited two multiplex Pakistani families, having 11 patients and 19 unaffected individuals in three generations. We performed genome-wide SNP genotyping, next-generation mate pairing and whole-exome sequencing of selected members to unveil genetic components. Candidate variants were screened in unrelated cohorts of 508 cases, 300 controls and fifteen families (with 51 affected and 47 unaffected individuals) of Pakistani origin. The structural impact of substituted residues was assessed through in silico modeling using iTASSER. In one family, we identified a rare novel microduplication (5q14.1_q14.2) encompassing critical genes involved in glutamate signaling, such as

Indexed as

AdultExomeFemaleGenetic Predisposition to DiseaseGenetic VariationGenome-Wide Association StudyGlutamic AcidHumansMaleMiddle AgedPakistanPedigreePenetranceSchizophreniaSignal TransductionSynaptic TransmissionGlutamic Acidduplicationfamilial schizophreniaglutamatergic neurotransmissionrare variants

Identifiers

PMID34946848
PMCPMC8700876
OpenAlexW3215157456

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.