Evidence map›Paper›PMID 34944553›Full record

ArticleBiomolecules2021

Prototype Foamy Virus Integrase Displays Unique Biochemical Activities among Retroviral Integrases.

Anthony J Rabe, Yow Yong Tan, Ross C Larue, Kristine E Yoder

Open access · goldAbstract read
In one paragraph

Article in Biomolecules, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Anthony J RabeDepartment of Cancer Biology and Genetics, The Ohio State University College of Medicine, Columbus, OH 43026, USA.
Yow Yong TanDepartment of Cancer Biology and Genetics, The Ohio State University College of Medicine, Columbus, OH 43026, USA.
Ross C LarueDepartment of Cancer Biology and Genetics, The Ohio State University College of Medicine, Columbus, OH 43026, USA.ORCID 0000-0002-0170-7345
Kristine E YoderDepartment of Cancer Biology and Genetics, The Ohio State University College of Medicine, Columbus, OH 43026, USA.
The Ohio State University · US

Funding

The Mechanics of Retroviral IntegrationR01AI126742 · NIAID · OHIO STATE UNIVERSITY · PI FISHEL, RICHARD, YODER, KRISTINE E · 2017 to 2021
$1.9M
National Institute of Allergy and Infectious Diseases AI126742NIAID NIH HHS R01 AI126742
6 · The paper itself

Abstract

Integrases of different retroviruses assemble as functional complexes with varying multimers of the protein. Retroviral integrases require a divalent metal cation to perform one-step transesterification catalysis. Tetrameric prototype foamy virus (PFV) intasomes assembled from purified integrase and viral DNA oligonucleotides were characterized for their activity in the presence of different cations. While most retroviral integrases are inactive in calcium, PFV intasomes appear to be uniquely capable of catalysis in calcium. The PFV intasomes also contrast with other retroviral integrases by displaying an inverse correlation of activity with increasing manganese beginning at relatively low concentrations. The intasomes were found to be significantly more active in the presence of chloride co-ions compared to acetate. While HIV-1 integrase appears to commit to a target DNA within 20 s, PFV intasomes do not commit to target DNA during their reaction lifetime. Together, these data highlight the unique biochemical activities of PFV integrase compared to other retroviral integrases.

Indexed as

AcetatesBinding SitesChloridesDNAEsterificationIntegrasesManganeseOligonucleotidesSpumavirusViral ProteinsAcetatesChloridesDNAIntegrasesManganeseOligonucleotidesViral Proteinsdivalent cationintegraseprototype foamy virusretrovirus

Identifiers

PMID34944553
PMCPMC8699820
OpenAlexW4200377946

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.