Evidence map›Paper›PMID 34944498›Full record

ArticleBiomolecules2021

Structural Characterization of Rat Galectin-5, an N-Tailed Monomeric Proto-Type-like Galectin.

Federico M Ruiz, Francisco J Medrano, Anna-Kristin Ludwig, Herbert Kaltner, Nadezhda V Shilova, Nicolai V Bovin, Hans-Joachim Gabius, Antonio Romero

Open access · goldAbstract read
In one paragraph

Article in Biomolecules, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 57% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Federico M RuizDepartment of Structural and Chemical Biology, CIB Margarita Salas, CSIC, Ramiro de Maeztu 9, 28040 Madrid, Spain.ORCID 0000-0002-0385-7777
Francisco J MedranoDepartment of Structural and Chemical Biology, CIB Margarita Salas, CSIC, Ramiro de Maeztu 9, 28040 Madrid, Spain.
Anna-Kristin LudwigPhysiological Chemistry, Department of Veterinary Sciences, Ludwig-Maximilians-University Munich, Lena-Christ-Str. 48, 82152 Planegg-Martinsried, Germany.
Herbert KaltnerPhysiological Chemistry, Department of Veterinary Sciences, Ludwig-Maximilians-University Munich, Lena-Christ-Str. 48, 82152 Planegg-Martinsried, Germany.
Nadezhda V ShilovaShemyakin & Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 16/10 Miklukho-Maklaya str., 117437 Moscow, Russia.ORCID 0000-0001-6003-071X
Nicolai V BovinShemyakin & Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, 16/10 Miklukho-Maklaya str., 117437 Moscow, Russia.ORCID 0000-0001-8669-4477
Hans-Joachim GabiusPhysiological Chemistry, Department of Veterinary Sciences, Ludwig-Maximilians-University Munich, Lena-Christ-Str. 48, 82152 Planegg-Martinsried, Germany.
Antonio RomeroDepartment of Structural and Chemical Biology, CIB Margarita Salas, CSIC, Ramiro de Maeztu 9, 28040 Madrid, Spain.ORCID 0000-0002-6990-6973
Centro de Investigaciones Biológicas Margarita Salas · ESLudwig-Maximilians-Universität München · DEInstitute of Bioorganic Chemistry · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Galectins are multi-purpose effectors acting via interactions with distinct counterreceptors based on protein-glycan/protein recognition. These processes are emerging to involve several regions on the protein so that the availability of a detailed structural characterization of a full-length galectin is essential. We report here the first crystallographic information on the N-terminal extension of the carbohydrate recognition domain of rat galectin-5, which is precisely described as an N-tailed proto-type-like galectin. In the ligand-free protein, the three amino-acid stretch from Ser2 to Ser5 is revealed to form an extra β-strand (F0), and the residues from Thr6 to Asn12 are part of a loop protruding from strands S1 and F0. In the ligand-bound structure, amino acids Ser2-Tyr10 switch position and are aligned to the edge of the β-sandwich. Interestingly, the signal profile in our glycan array screening shows the sugar-binding site to preferentially accommodate the histo-blood-group B (type 2) tetrasaccharide and N-acetyllactosamine-based di- and oligomers. The crystal structures revealed the characteristically preformed structural organization around the central Trp77 of the CRD with involvement of the sequence signature's amino acids in binding. Ligand binding was also characterized calorimetrically. The presented data shows that the N-terminal extension can adopt an ordered structure and shapes the hypothesis that a ligand-induced shift in the equilibrium between flexible and ordered conformers potentially acts as a molecular switch, enabling new contacts in this region.

Indexed as

Amino Acid MotifsAnimalsCarbohydrate SequenceCrystallography, X-RayGalectinsModels, MolecularPolysaccharidesProtein BindingProtein DomainsProtein MultimerizationProtein Structure, SecondaryRatsScattering, Small Anglegalectin 5GalectinsPolysaccharidesblood group Blectinsugar codeβ-hairpinβ-sandwich

Identifiers

PMID34944498
PMCPMC8699261
OpenAlexW4200298221

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.