Evidence map›Paper›PMID 34944367›Full record

ArticleAnimals : an open access journal from MDPI2021

Dynamics of Known Long Non-Coding RNAs during the Maternal-to-Zygotic Transition in Rabbit.

Yu Shi, Mingcheng Cai, Kun Du, Xue Bai, Lipeng Tang, Xianbo Jia, Shiyi Chen, Jie Wang, Songjia Lai

Open access · goldAbstract read
In one paragraph

Article in Animals : an open access journal from MDPI, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Yu ShiFarm Animal Genetic Resources Exploration and Innovation Key Laboratory Province, Sichuan Agricultural University, Chengdu 611130, China.ORCID 0000-0001-6210-9616
Mingcheng CaiCollege of Landscape Architecture and Life Science/Institute of Special Plants, Chongqing University of Arts and Science, Yongchuan, Chongqing 402160, China.
Kun DuFarm Animal Genetic Resources Exploration and Innovation Key Laboratory Province, Sichuan Agricultural University, Chengdu 611130, China.
Xue BaiFarm Animal Genetic Resources Exploration and Innovation Key Laboratory Province, Sichuan Agricultural University, Chengdu 611130, China.
Lipeng TangFarm Animal Genetic Resources Exploration and Innovation Key Laboratory Province, Sichuan Agricultural University, Chengdu 611130, China.
Xianbo JiaFarm Animal Genetic Resources Exploration and Innovation Key Laboratory Province, Sichuan Agricultural University, Chengdu 611130, China.ORCID 0000-0002-6885-4104
Shiyi ChenFarm Animal Genetic Resources Exploration and Innovation Key Laboratory Province, Sichuan Agricultural University, Chengdu 611130, China.
Jie WangFarm Animal Genetic Resources Exploration and Innovation Key Laboratory Province, Sichuan Agricultural University, Chengdu 611130, China.ORCID 0000-0002-1399-7079
Songjia LaiFarm Animal Genetic Resources Exploration and Innovation Key Laboratory Province, Sichuan Agricultural University, Chengdu 611130, China.
Sichuan Agricultural University · CNChongqing University of Arts and Sciences · CN

Funding

the major research projects in Sichuan Province 2021YFYZ0033
6 · The paper itself

Abstract

The control of pre-implantation development in mammals undergoes a maternal-to-zygotic transition (MZT) after fertilization. The transition involves maternal clearance and zygotic genome activation remodeling the terminal differentiated gamete to confer totipotency. In the study, we first determined the profile of long non-coding RNAs (lncRNAs) of mature rabbit oocyte, 2-cell, 4-cell, 8-cell, and morula embryos using RNA-seq. A total of 2673 known rabbit lncRNAs were identified. The lncRNAs exhibited dynamic expression patterns during pre-implantation development. Moreover, 107 differentially expressed lncRNAs (DE lncRNAs) were detected between mature oocyte and 2-cell embryo, while 419 DE lncRNAs were detected between 8-cell embryo and morula, consistent with the occurrence of minor and major zygotic genome activation (ZGA) wave of rabbit pre-implanted embryo. This study then predicted the potential target genes of DE lncRNAs based on the trans-regulation mechanism of lncRNAs. The GO and KEGG analyses showed that lncRNAs with stage-specific expression patterns promoted embryo cleavage and synchronic development by regulating gene transcription and translation, intracellular metabolism and organelle organization, and intercellular signaling transduction. The correlation analysis between mRNAs and lncRNAs identified that lncRNAs ENSOCUG00000034943 and ENSOCUG00000036338 may play a vital role in the late-period pre-implantation development by regulating

Indexed as

lncRNAmaternal-to-zygotic transitionpre-implantationrabbit

Identifiers

PMID34944367
PMCPMC8698111
OpenAlexW4200009781

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.