Evidence map›Paper›PMID 34943957›Full record

ArticleCells2021

Mouse Organ-Specific Proteins and Functions.

Bingyun Sun, Cynthia Lorang, Shizhen Qin, Yijuan Zhang, Ken Liu, Gray Li, Zhi Sun, Ashley Francke, Angelita G Utleg, Zhiyuan Hu and 3 more

Open access · goldAbstract read
In one paragraph

Article in Cells, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 2 countries.

Bingyun SunDepartments of Chemistry, Simon Fraser University, Burnaby, BC V5A1S6, Canada.
Cynthia LorangInstitute for Systems Biology, Seattle, WA 98109, USA.
Shizhen QinInstitute for Systems Biology, Seattle, WA 98109, USA.
Yijuan ZhangDepartments of Chemistry, Simon Fraser University, Burnaby, BC V5A1S6, Canada.
Ken LiuDepartments of Chemistry, Simon Fraser University, Burnaby, BC V5A1S6, Canada.
Gray LiInstitute for Systems Biology, Seattle, WA 98109, USA.
Zhi SunInstitute for Systems Biology, Seattle, WA 98109, USA.
Ashley FranckeDepartments of Computing Science, Simon Fraser University, Burnaby, BC V5A1S6, Canada.
Angelita G UtlegInstitute for Systems Biology, Seattle, WA 98109, USA.
Zhiyuan HuInstitute for Systems Biology, Seattle, WA 98109, USA.
Kai WangInstitute for Systems Biology, Seattle, WA 98109, USA.
Robert L MoritzInstitute for Systems Biology, Seattle, WA 98109, USA.ORCID 0000-0002-3216-9447
Leroy HoodInstitute for Systems Biology, Seattle, WA 98109, USA.
Institute for Systems Biology · USSimon Fraser University · CA

Funding

Systems BiologyU19AG023122 · NIA · TRANSLATIONAL GENOMICS RESEARCH INST · PI JODI A LAPIDUS · 2004 to 2026
$102.6M
Shortening the development cycle time of Trans Proteomic Pipeline tools with high performance computingR01GM087221 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI DEUTSCH, ERIC, MORITZ, ROBERT L · 2010 to 2021
$6.0M
Acquisition of Fusion Lumos Orbitrap mass spectrometerS10OD026936 · OD · INSTITUTE FOR SYSTEMS BIOLOGY · PI MORITZ, ROBERT L · 2019 to 2019
$600k
Proteogenomic resource for the development of novel markers for Lyme diseaseR21AI142302 · NIAID · INSTITUTE FOR SYSTEMS BIOLOGY · PI MORITZ, ROBERT L · 2019 to 2020
$522k
NIAID NIH HHS R21 AI142302NIA NIH HHS U19 AG023122NIGMS NIH HHS R01 GM087221NIH HHS S10 OD026936the United States Department of Defense W911SR-06-C-0057the United States Department of Defense W911SR-07-C-0101
6 · The paper itself

Abstract

Organ-specific proteins (OSPs) possess great medical potential both in clinics and in biomedical research. Applications of them-such as alanine transaminase, aspartate transaminase, and troponins-in clinics have raised certain concerns of their organ specificity. The dynamics and diversity of protein expression in heterogeneous human populations are well known, yet their effects on OSPs are less addressed. Here, we used mice as a model and implemented a breadth study to examine the panorgan proteome for potential variations in organ specificity in different genetic backgrounds. Using reasonable resources, we generated panorgan proteomes of four in-bred mouse strains. The results revealed a large diversity that was more profound among OSPs than among proteomes overall. We defined a robustness score to quantify such variation and derived three sets of OSPs with different stringencies. In the meantime, we found that the enriched biological functions of OSPs are also organ-specific and are sensitive and useful to assess the quality of OSPs. We hope our breadth study can open doors to explore the molecular diversity and dynamics of organ specificity at the protein level.

Indexed as

ProteomicsAnimalsGenetic VariationHumansMiceOrgan SpecificityProteinsProteomeProteinsProteomebiomarkersbone proteomebrain proteomeeye proteomefat proteomeheart proteomeintestine proteomekidney proteomeliver proteomelung proteomemouse proteomeorgan proteomeorgan-specific proteinspancreas proteomeproteome diversityproteome dynamicsskeletal muscle proteomespleen proteometestis proteome

Identifiers

PMID34943957
PMCPMC8700158
OpenAlexW4206611230

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.