Evidence map›Paper›PMID 34942167›Full record

ArticleJournal of molecular biology2022

Biosynthesis and Genetic Incorporation of 3,4-Dihydroxy-L-Phenylalanine into Proteins in Escherichia coli.

Yuda Chen, Axel Loredo, Anna Chung, Mengxi Zhang, Rui Liu, Han Xiao

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. In Vivo Biosynthesis and Direct Incorporation of Noncanonical Amino Acids into Proteins.Chembiochem : a European journal of chemical biology · 2025
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. BeyondChemical reviews · 2025
    Review
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  12. Review
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  14. Review
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  16. Expanding the eukaryotic genetic code with a biosynthesized 21st amino acid.Protein science : a publication of the Protein Society · 2022
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yuda ChenDepartment of Chemistry, Rice University, 6100 Main Street, Houston, TX 77005, United States.
Axel LoredoDepartment of Chemistry, Rice University, 6100 Main Street, Houston, TX 77005, United States.
Anna ChungDepartment of Chemistry, Rice University, 6100 Main Street, Houston, TX 77005, United States.
Mengxi ZhangDepartment of Chemistry, Rice University, 6100 Main Street, Houston, TX 77005, United States.
Rui LiuDepartment of Chemistry, Rice University, 6100 Main Street, Houston, TX 77005, United States.
Han XiaoDepartment of Chemistry, Rice University, 6100 Main Street, Houston, TX 77005, United States; Department of Biosciences, Rice University, 6100 Main Street, Houston, TX 77005, United States; Department of Bioengineering, Rice University, 6100 Main Street, Houston, TX 77005, United States. Electronic address: han.xiao@rice.edu.
Rice University · US

Funding

Targeting Siglec-9/Sialoglycan Interactions to Enhance NK Functions During HIV InfectionR01AI165079 · NIAID · WISTAR INSTITUTE · PI ABDEL MOHSEN, MOHAMED, XIAO, HAN · 2021 to 2025
$3.1M
Engineering Proteins with Noncanonical Amino AcidsR35GM133706 · NIGMS · RICE UNIVERSITY · PI Han Xiao · 2019 to 2026
$2.9M
Development of Bone-Targeting Antibodies for Ewing Sarcoma Using Genetic Code ExpansionR21CA255894 · NCI · RICE UNIVERSITY · PI XIAO, HAN, YUSTEIN, JASON · 2021 to 2023
$568k
NCI NIH HHS R21 CA255894NIAID NIH HHS R01 AI165079NIGMS NIH HHS R35 GM133706
6 · The paper itself

Abstract

While 20 canonical amino acids are used by most organisms for protein synthesis, the creation of cells that can use noncanonical amino acids (ncAAs) as additional protein building blocks holds great promise for preparing novel medicines and for studying complex questions in biological systems. However, only a small number of biosynthetic pathways for ncAAs have been reported to date, greatly restricting our ability to generate cells with ncAA building blocks. In this study, we report the creation of a completely autonomous bacterium that utilizes 3,4-dihydroxy-L-phenylalanine (DOPA) as its 21st amino acid building block. Like canonical amino acids, DOPA can be biosynthesized without exogenous addition and can be genetically incorporated into proteins in a site-specific manner. Equally important, the protein production yields of DOPA-containing proteins from these autonomous cells are greater than those from cells exogenously fed with 9 mM DOPA. The unique catechol moiety of DOPA can be used as a versatile handle for site-specific protein functionalizations via either oxidative coupling or strain-promoted oxidation-controlled cyclooctyne-1,2-quinone (SPOCQ) cycloaddition reactions. We further demonstrate the use of these autonomous cells in preparing fluorophore-labeled anti-human epidermal growth factor 2 (HER2) antibodies for the detection of HER2 expression on cancer cells.

Indexed as

Cell EngineeringDihydroxyphenylalanineEscherichia coliProtein BiosynthesisAntibodiesErb-b2 Receptor Tyrosine KinasesGenetic CodeHumansAntibodiesDihydroxyphenylalanineERBB2 protein, humanErb-b2 Receptor Tyrosine Kinasesbiosynthesisdihydroxyphenylalaninegenetic code expansionoxidative couplingsite-specific conjugation

Identifiers

PMID34942167
PMCPMC9018569
OpenAlexW4200170891

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.