Evidence map›Paper›PMID 34941903›Full record

ArticlePLoS genetics2021

Loss of YhcB results in dysregulation of coordinated peptidoglycan, LPS and phospholipid synthesis during Escherichia coli cell growth.

Emily C A Goodall, Georgia L Isom, Jessica L Rooke, Karthik Pullela, Christopher Icke, Zihao Yang, Gabriela Boelter, Alun Jones, Isabel Warner, Rochelle Da Costa and 16 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 30 citations in OpenAlex.

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  4. Essential Role of LapD in the Absence of Cardiolipins.International journal of molecular sciences · 2026
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  6. Decoding gene essentiality inMicrobiology spectrum · 2025
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  10. Review
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  12. Article
  13. Suppressors ofInternational journal of molecular sciences · 2023
    Article
  14. Cross-talk between phospholipid synthesis and peptidoglycan expansion by a cell wall hydrolase.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 6 institutions in 4 countries.

Emily C A GoodallInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Australia.ORCID 0000-0003-4846-6566
Georgia L IsomInstitute of Microbiology and Infection, University of Birmingham, Birmingham, United Kingdom.ORCID 0000-0001-9023-705X
Jessica L RookeInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Australia.ORCID 0000-0003-1258-4018
Karthik PullelaInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Australia.ORCID 0000-0002-9901-567X
Christopher IckeInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Australia.ORCID 0000-0002-7815-8591
Zihao YangInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Australia.ORCID 0000-0002-0153-2872
Gabriela BoelterInstitute of Microbiology and Infection, University of Birmingham, Birmingham, United Kingdom.ORCID 0000-0002-1812-8681
Alun JonesInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Australia.
Isabel WarnerInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Australia.ORCID 0000-0002-2236-8442
Rochelle Da CostaInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Australia.ORCID 0000-0002-2144-6496
Bing ZhangInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Australia.ORCID 0000-0001-8405-9242
James RaeInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Australia.
Wee Boon TanDepartment of Chemistry, National University of Singapore, Singapore.
Matthias WinkleCentre for Bacterial Cell Biology, Biosciences Institute, Newcastle University, Newcastle upon Tyne, United Kingdom.
Antoine Delhayede Duve Institute, Université Catholique de Louvain, Brussels, Belgium.ORCID 0000-0003-4682-6687
Eva HeinzDepartments of Vector Biology and Clinical Sciences, Liverpool School of Tropical Medicine, Liverpool, United Kingdom.ORCID 0000-0003-4413-3756
Jean-Francois Colletde Duve Institute, Université Catholique de Louvain, Brussels, Belgium.
Adam F CunninghamInstitute of Microbiology and Infection, University of Birmingham, Birmingham, United Kingdom.ORCID 0000-0003-0248-964X
Mark A BlaskovichInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Australia.ORCID 0000-0001-9447-2292
Robert G PartonInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Australia.ORCID 0000-0002-7494-5248
Jeff A ColeInstitute of Microbiology and Infection, University of Birmingham, Birmingham, United Kingdom.
Manuel BanzhafInstitute of Microbiology and Infection, University of Birmingham, Birmingham, United Kingdom.ORCID 0000-0002-4682-1037
Shu-Sin ChngDepartment of Chemistry, National University of Singapore, Singapore.ORCID 0000-0001-5466-7183
Waldemar VollmerCentre for Bacterial Cell Biology, Biosciences Institute, Newcastle University, Newcastle upon Tyne, United Kingdom.ORCID 0000-0003-0408-8567
Jack A BryantInstitute of Microbiology and Infection, University of Birmingham, Birmingham, United Kingdom.
Ian R HendersonInstitute for Molecular Bioscience, The University of Queensland, St. Lucia, Australia.ORCID 0000-0002-9954-4977
The University of Queensland · AUUniversity of Birmingham · GBde Duve Institute · BENational University of Singapore · SGNewcastle University · GBLiverpool School of Tropical Medicine · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The cell envelope is essential for viability in all domains of life. It retains enzymes and substrates within a confined space while providing a protective barrier to the external environment. Destabilising the envelope of bacterial pathogens is a common strategy employed by antimicrobial treatment. However, even in one of the best studied organisms, Escherichia coli, there remain gaps in our understanding of how the synthesis of the successive layers of the cell envelope are coordinated during growth and cell division. Here, we used a whole-genome phenotypic screen to identify mutants with a defective cell envelope. We report that loss of yhcB, a conserved gene of unknown function, results in loss of envelope stability, increased cell permeability and dysregulated control of cell size. Using whole genome transposon mutagenesis strategies, we report the comprehensive genetic interaction network of yhcB, revealing all genes with a synthetic negative and a synthetic positive relationship. These genes include those previously reported to have a role in cell envelope biogenesis. Surprisingly, we identified genes previously annotated as essential that became non-essential in a ΔyhcB background. Subsequent analyses suggest that YhcB functions at the junction of several envelope biosynthetic pathways coordinating the spatiotemporal growth of the cell, highlighting YhcB as an as yet unexplored antimicrobial target.

Indexed as

Cell DivisionCell MembraneCell WallEscherichia coliEscherichia coli ProteinsGene Expression Regulation, BacterialLipopolysaccharidesMutagenesisOxidoreductasesPeptidoglycanPhospholipidsEscherichia coli ProteinsLipopolysaccharidesOxidoreductasesPeptidoglycanPhospholipidsYhcB protein, E coli

Identifiers

PMID34941903
PMCPMC8741058
OpenAlexW4200426452

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.