Evidence map›Paper›PMID 34941901›Full record

ArticlePloS one2021

Molecular subtyping for source tracking of Escherichia coli using core genome multilocus sequence typing at a food manufacturing plant.

Ayaka Nakamura, Hajime Takahashi, Maki Arai, Tomoki Tsuchiya, Shohei Wada, Yuki Fujimoto, Yoshiomi Shimabara, Takashi Kuda, Bon Kimura

Abstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Ayaka NakamuraDepartment of Food Science and Technology, Tokyo University of Marine Science and Technology, Minato-ku, Tokyo, Japan.
Hajime TakahashiDepartment of Food Science and Technology, Tokyo University of Marine Science and Technology, Minato-ku, Tokyo, Japan.ORCID 0000-0002-8419-0141
Maki AraiNichirei Foods Incorporation, Chuo-ku, Tokyo, Japan.
Tomoki TsuchiyaNichirei Foods Incorporation, Chuo-ku, Tokyo, Japan.
Shohei WadaNichirei Corporation, Chuo-ku, Tokyo, Japan.
Yuki FujimotoNichirei Corporation, Chuo-ku, Tokyo, Japan.
Yoshiomi ShimabaraNichirei Corporation, Chuo-ku, Tokyo, Japan.
Takashi KudaDepartment of Food Science and Technology, Tokyo University of Marine Science and Technology, Minato-ku, Tokyo, Japan.
Bon KimuraDepartment of Food Science and Technology, Tokyo University of Marine Science and Technology, Minato-ku, Tokyo, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

When harmful bacteria are detected in the final product at a food manufacturing plant, it is necessary to identify and eliminate the source of contamination so that it does not occur again. In the current study, the source of contamination was tracked using core genome multilocus sequence typing (cgMLST) analysis in cases where Escherichia coli was detected in the final product at a food manufacturing plant. cgMLST analysis was performed on 40 strains of E. coli collected from the environment [floor (26 strains), drainage ditch (5 strains), container (4 strains), post-heating production line (1 strain)] and products [final product (3 strains) and intermediate product (1 strain)]. In total, 40 E. coli isolates were classified into 17 genogroups by cgMLST analysis. The 4 E. coli strains isolated from the intermediate and final products were classified into two genogroups (I and II). Certain isolates collected from the environment also belonged to those genogroups, it was possible to estimate the transmission of E. coli in the manufacturing plant. Thus, the dynamics of E. coli in the food manufacturing location were clarified by using cgMLST analysis. In conclusion, our results indicate that cgMLST analysis can be effectively used for hygiene management at food manufacturing locations.

Indexed as

Disease OutbreaksEscherichia coliEscherichia coli InfectionsFood IndustryGenome, BacterialHumansManufacturing and Industrial FacilitiesMolecular EpidemiologyMultilocus Sequence TypingPhylogenyWhole Genome Sequencing

Identifiers

PMID34941901
PMCPMC8699670

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.