Evidence map›Paper›PMID 34939169›Full record

ArticleProtoplasma2022

Submergence of the filamentous Zygnematophyceae Mougeotia induces differential gene expression patterns associated with core metabolism and photosynthesis.

Janine M R Fürst-Jansen, Sophie de Vries, Maike Lorenz, Klaus von Schwartzenberg, John M Archibald, Jan de Vries

Open access · hybridAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Protoplasma, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Current and future perspectives for enhancing our understanding of the evolution of plant metabolism.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Article
  3. Evolution of phosphate scouting in the terrestrial biosphere.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
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  7. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Janine M R Fürst-JansenDepartment of Applied Bioinformatics, Institute for Microbiology and Genetics, University of Goettingen, Goldschmidtstr. 1, University of Goettingen, 37077, Goettingen, Germany.ORCID https://orcid.org/0000-0002-5269-8725
Sophie de VriesDepartment of Applied Bioinformatics, Institute for Microbiology and Genetics, University of Goettingen, Goldschmidtstr. 1, University of Goettingen, 37077, Goettingen, Germany.ORCID https://orcid.org/0000-0002-5267-8935
Maike LorenzDepartment of Experimental Phycology and SAG Culture Collection of Algae, Albrecht-von-Haller Institute for Plant Science, University of Goettingen, Nikolausberger Weg 18, 37073, Goettingen, Germany.ORCID https://orcid.org/0000-0002-2277-3077
Klaus von SchwartzenbergInstitute of Plant Science and Microbiology, Microalgae and Zygnematophyceae Collection Hamburg (MZCH) and Aquatic Ecophysiology and Phycology, Universität Hamburg, Ohnhorststr. 18, 22609, Hamburg, Germany.
John M ArchibaldDepartment of Biochemistry and Molecular Biology, Dalhousie University, Sir Charles Tupper Medical Building, 5850 College Street, Halifax, NS, B3H 4R2, Canada.ORCID https://orcid.org/0000-0001-7255-780X
Jan de VriesDepartment of Applied Bioinformatics, Institute for Microbiology and Genetics, University of Goettingen, Goldschmidtstr. 1, University of Goettingen, 37077, Goettingen, Germany. devries.jan@uni-goettingen.de.ORCID http://orcid.org/0000-0003-3507-5195
University of Göttingen · DEDalhousie University · CANephrologisches Zentrum Goettingen · DEUniversität Hamburg · DE

Funding

Deutsche Forschungsgemeinschaft VR 132/4-1h2020 european research council 852725natural sciences and engineering research council of canada RGPIN-2014-05871
6 · The paper itself

Abstract

The streptophyte algal class Zygnematophyceae is the closest algal sister lineage to land plants. In nature, Zygnematophyceae can grow in both terrestrial and freshwater habitats and how they do this is an important unanswered question. Here, we studied what happens to the zygnematophyceaen alga Mougeotia sp., which usually occurs in permanent and temporary freshwater bodies, when it is shifted to liquid growth conditions after growth on a solid substrate. Using global differential gene expression profiling, we identified changes in the core metabolism of the organism interlinked with photosynthesis; the latter went hand in hand with measurable impact on the photophysiology as assessed via pulse amplitude modulation (PAM) fluorometry. Our data reveal a pronounced change in the overall physiology of the alga after submergence and pinpoint candidate genes that play a role. These results provide insight into the importance of photophysiological readjustment when filamentous Zygnematophyceae transition between terrestrial and aquatic habitats.

Indexed as

MougeotiaStreptophytaGene ExpressionPhotosynthesisPhylogenyPlantsAlgal culturingAlgal physiologyCharophytesRNAseqStreptophyte algae

Identifiers

PMID34939169
PMCPMC9385824
OpenAlexW4200035647

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.