Evidence map›Paper›PMID 34939126›Full record

ArticleGlycobiology2022

Analysis of fungal high-mannose structures using CAZymes.

Bartłomiej M Kołaczkowski, Christian I Jørgensen, Nikolaj Spodsberg, Mary A Stringer, Nitin T Supekar, Parastoo Azadi, Peter Westh, Kristian B R M Krogh, Kenneth Jensen

Open access · bronzeAbstract read
In one paragraph

Article in Glycobiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Bartłomiej M KołaczkowskiDepartment of Science and Environment, Roskilde University, Universitetsvej 1, Building 28, Roskilde 4000, Denmark.ORCID 0000-0003-3464-8748
Christian I JørgensenNovozymes A/S, Biologiens Vej 2, Kongens Lyngby 2800, Denmark.
Nikolaj SpodsbergNovozymes A/S, Biologiens Vej 2, Kongens Lyngby 2800, Denmark.
Mary A StringerNovozymes A/S, Biologiens Vej 2, Kongens Lyngby 2800, Denmark.
Nitin T SupekarComplex Carbohydrate Research Center, 315 Riverbend Rd. University of Georgia, Athens, Georgia 30602 USA.ORCID 0000-0002-7006-7177
Parastoo AzadiComplex Carbohydrate Research Center, 315 Riverbend Rd. University of Georgia, Athens, Georgia 30602 USA.
Peter WesthDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Building 224, Kongens Lyngby 2800, Denmark.
Kristian B R M KroghNovozymes A/S, Biologiens Vej 2, Kongens Lyngby 2800, Denmark.
Kenneth JensenNovozymes A/S, Biologiens Vej 2, Kongens Lyngby 2800, Denmark.ORCID 0000-0001-6286-5577
Novozymes (Denmark) · DKUniversity of Georgia · USRoskilde University · DKTechnical University of Denmark · DK

Funding

National Glycoscience Resource- CCRC Service and Training - NGlycoR@CCRCR24GM137782 · NIGMS · UNIVERSITY OF GEORGIA · PI Parastoo Azadi · 2020 to 2026
$5.2M
NIGMS NIH HHS R24 GM137782
6 · The paper itself

Abstract

Glycoengineering ultimately allows control over glycosylation patterns to generate new glycoprotein variants with desired properties. A common challenge is glycan heterogeneity, which may affect protein function and limit the use of key techniques such as mass spectrometry. Moreover, heterologous protein expression can introduce nonnative glycan chains that may not fulfill the requirement for therapeutic proteins. One strategy to address these challenges is partial trimming or complete removal of glycan chains, which can be obtained through selective application of exoglycosidases. Here, we demonstrate an enzymatic O-deglycosylation toolbox of a GH92 α-1,2-mannosidase from Neobacillus novalis, a GH2 β-galactofuranosidase from Amesia atrobrunnea and the jack bean α-mannosidase. The extent of enzymatic O-deglycosylation was mapped against a full glycosyl linkage analysis of the O-glycosylated linker of cellobiohydrolase I from Trichoderma reesei (TrCel7A). Furthermore, the influence of deglycosylation on TrCel7A functionality was evaluated by kinetic characterization of native and O-deglycosylated forms of TrCel7A. This study expands structural knowledge on fungal O-glycosylation and presents a ready-to-use enzymatic approach for controlled O-glycan engineering in glycoproteins expressed in filamentous fungi.

Indexed as

Cellulose 1,4-beta-CellobiosidaseMannosealpha-MannosidaseFungal ProteinsGlycosylationMannosidasesalpha-MannosidaseCellulose 1,4-beta-CellobiosidaseFungal ProteinsMannoseMannosidasesAspergillus oryzaecellobiohydrolasefungal glycoproteinsglycoside hydrolaseO-glycosylation

Identifiers

PMID34939126
PMCPMC8970417
OpenAlexW4200180630

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.