Evidence map›Paper›PMID 34937693›Full record

ArticleAnnals of the rheumatic diseases2022

Large-scale analysis of longitudinal skin gene expression in systemic sclerosis reveals relationships of immune cell and fibroblast activity with skin thickness and a trend towards normalisation over time.

Brian Skaug, Marka A Lyons, William R Swindell, Gloria A Salazar, Minghua Wu, Tuan M Tran, Julio Charles, Connor P Vershel, Maureen D Mayes, Shervin Assassi

Open access · greenAbstract read
In one paragraph

Article in Annals of the rheumatic diseases, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 31 citations in OpenAlex.

  1. Trial
  2. Article
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  5. Molecular imaging of fibroblast activation in systemic sclerosis using [European journal of nuclear medicine and molecular imaging · 2026
    Article
  6. Proceedings of the 2Mediterranean journal of rheumatology · 2026
    Article
  7. Article
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  9. Article
  10. Stem cell therapy in systemic sclerosis.Clinical rheumatology · 2025
    Review
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  19. Article
  20. Predicting the Progression of Very Early Systemic Sclerosis: Current Insights.Open access rheumatology : research and reviews · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Brian Skaug *Division of Rheumatology, University of Texas Health Science Center Houston, McGovern Medical School, Houston, Texas, USA brian.a.skaug@uth.tmc.edu shervin.assassi@uth.tmc.edu.ORCID 0000-0002-6689-4655
Marka A Lyons *Division of Rheumatology, University of Texas Health Science Center Houston, McGovern Medical School, Houston, Texas, USA.
William R SwindellDepartment of Internal Medicine, The Jewish Hospital, Cincinnati, Ohio, USA.
Gloria A SalazarDivision of Rheumatology, University of Texas Health Science Center Houston, McGovern Medical School, Houston, Texas, USA.
Minghua WuDivision of Rheumatology, University of Texas Health Science Center Houston, McGovern Medical School, Houston, Texas, USA.ORCID 0000-0002-0388-2032
Tuan M TranDepartment of Genetics, University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Julio CharlesDivision of Rheumatology, University of Texas Health Science Center Houston, McGovern Medical School, Houston, Texas, USA.
Connor P VershelDivision of Rheumatology, University of Texas Health Science Center Houston, McGovern Medical School, Houston, Texas, USA.
Maureen D MayesDivision of Rheumatology, University of Texas Health Science Center Houston, McGovern Medical School, Houston, Texas, USA.
Shervin AssassiDivision of Rheumatology, University of Texas Health Science Center Houston, McGovern Medical School, Houston, Texas, USA brian.a.skaug@uth.tmc.edu shervin.assassi@uth.tmc.edu.ORCID 0000-0002-8059-9978
The University of Texas Health Science Center at Houston · USJewish Hospital · USThe University of Texas MD Anderson Cancer Center · US

Funding

CFlm25 mediated alternative polyadenylation regulates fibrosis in systemic sclerosisR01AR073284 · NIAMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ASSASSI, SHERVIN, MILLS, TINGTING WENG · 2019 to 2023
$1.7M
Combined Optical Coherence Elastography and Tomography for Assessing Skin Involvement in Systemic SclerosisR61AR078078 · NIAMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ASSASSI, SHERVIN, LARIN, KIRILL V · 2020 to 2022
$780k
Role of Interferon Regulatory Factor 7 in Systemic Sclerosis PathogenesisR56AR078211 · NIAMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ASSASSI, SHERVIN, WU, MINGHUA · 2021 to 2021
$346k
NIAMS NIH HHS R01 AR073284NIAMS NIH HHS R56 AR078211NIAMS NIH HHS R61 AR078078
6 · The paper itself

Abstract

objectivesDetermine relationships between skin gene expression and systemic sclerosis (SSc) clinical disease features, and changes in skin gene expression over time.

methodsA total of 339 forearm skin biopsies were obtained from 113 SSc patients and 44 matched healthy controls. 105 SSc patients had a second biopsy, and 76 had a third biopsy. Global gene expression profiling was performed, and differentially expressed genes and cell type-specific signatures in SSc were evaluated for relationships to modified Rodnan Skin Score (mRSS) and other clinical variables. Changes in skin gene expression over time were analysed by mixed effects models and principal component analysis. Immunohistochemical staining was performed to validate conclusions.

resultsGene expression dysregulation was greater in SSc patients with affected skin than in those with unaffected skin. Immune cell and fibroblast signatures positively correlated with mRSS. High baseline immune cell and fibroblast signatures predicted higher mRSS over time, but were not independently predictive of longitudinal mRSS after adjustment for baseline mRSS. In early diffuse cutaneous SSc, immune cell and fibroblast signatures declined over time, and overall skin gene expression trended towards normalisation. On immunohistochemical staining, most early diffuse cutaneous SSc patients with high baseline T cell and macrophage numbers had declines in these numbers at follow-up.

conclusionsSkin thickness in SSc is related to dysregulated immune cell and fibroblast gene expression. Skin gene expression changes over time in early diffuse SSc, with a tendency towards normalisation. These observations are relevant for understanding SSc pathogenesis and could inform treatment strategies and clinical trial design.

Indexed as

Scleroderma, DiffuseScleroderma, LocalizedScleroderma, SystemicFibroblastsGene ExpressionHumansSkinautoimmune diseasesfibroblastssclerodermasystemic

Identifiers

PMID34937693
PMCPMC8956967
OpenAlexW4200166392

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.