Evidence map›Paper›PMID 34936864›Full record

ArticleCell reports2021

Single-cell transcriptomic analysis of zebrafish cranial neural crest reveals spatiotemporal regulation of lineage decisions during development.

David Tatarakis, Zixuan Cang, Xiaojun Wu, Praveer P Sharma, Matthew Karikomi, Adam L MacLean, Qing Nie, Thomas F Schilling

Abstract read
In one paragraph

Article in Cell reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
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  4. Review
  5. Article
  6. Article
  7. A dual role for GLI3 signaling in neural crest development.Development (Cambridge, England) · 2026
    Article
  8. Identification of neural crest and melanoma cancer cell invasion and migration genes using high-throughput screening and deep attention networks.Developmental dynamics : an official publication of the American Association of Anatomists · 2026
    Article
  9. Article
  10. Ectomesenchymal identity emerges via relief ofbioRxiv : the preprint server for biology · 2025
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Craniofacial developmental biology in the single-cell era.Development (Cambridge, England) · 2023
    Review
  17. Article
  18. Article
  19. Review
  20. High Bone Mass Disorders: New Insights From Connecting the Clinic and the Bench.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

David TatarakisDepartment of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, USA.
Zixuan CangDepartment of Mathematics, University of California, Irvine, Irvine, CA, USA.
Xiaojun WuDepartment of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA.
Praveer P SharmaDepartment of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, USA.
Matthew KarikomiDepartment of Mathematics, University of California, Irvine, Irvine, CA, USA.
Adam L MacLeanDepartment of Quantitative and Computational Biology, University of Southern California, Los Angeles, CA, USA.
Qing NieDepartment of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, USA; Department of Mathematics, University of California, Irvine, Irvine, CA, USA.
Thomas F SchillingDepartment of Developmental and Cell Biology, University of California, Irvine, Irvine, CA, USA. Electronic address: tschilli@uci.edu.

Funding

THE ROLE OF ATROPHIN-2 IN CARTILAGE PATTERNING AND POLARITY IN ZEBRAFISHR01DE013828 · NIDCR · UNIVERSITY OF CALIFORNIA-IRVINE · PI SCHILLING, THOMAS F · 2001 to 2025
$9.1M
Regulation of Morphogenesis and Extracellular Matrix Assembly at the Myotendinous JunctionR01AR067797 · NIAMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI Thomas F Schilling · 2016 to 2026
$3.5M
Defining an Integrated Signaling Network That Patterns the Craniofacial SkeletonR01DE023050 · NIDCR · UNIVERSITY OF COLORADO DENVER · PI CLOUTHIER, DAVID E., NIE, QING · 2014 to 2018
$3.2M
Mathematical, Computational and Systems BiologyT32EB009418 · NIBIB · UNIVERSITY OF CALIFORNIA-IRVINE · PI LANDER, ARTHUR D, NIE, QING · 2009 to 2019
$2.4M
NIAMS NIH HHS R01 AR067797NIBIB NIH HHS T32 EB009418NIDCR NIH HHS R01 DE013828NIDCR NIH HHS R01 DE023050
6 · The paper itself

Abstract

Neural crest (NC) cells migrate throughout vertebrate embryos to give rise to a huge variety of cell types, but when and where lineages emerge and their regulation remain unclear. We have performed single-cell RNA sequencing (RNA-seq) of cranial NC cells from the first pharyngeal arch in zebrafish over several stages during migration. Computational analysis combining pseudotime and real-time data reveals that these NC cells first adopt a transitional state, becoming specified mid-migration, with the first lineage decisions being skeletal and pigment, followed by neural and glial progenitors. In addition, by computationally integrating these data with RNA-seq data from a transgenic Wnt reporter line, we identify gene cohorts with similar temporal responses to Wnts during migration and show that one, Atp6ap2, is required for melanocyte differentiation. Together, our results show that cranial NC cell lineages arise progressively and uncover a series of spatially restricted cell interactions likely to regulate such cell-fate decisions.

Indexed as

Cell LineageAnimalsAnimals, Genetically ModifiedBranchial RegionCell CommunicationCell DifferentiationCell MovementCranial NervesEmbryo, NonmammalianGene Expression ProfilingGene Expression Regulation, DevelopmentalNeural CrestRNA-SeqSignal TransductionSingle-Cell AnalysisWnt ProteinsWnt ProteinsZebrafish Proteinscell fateDanio rerioneural crestsingle-cell RNA-seqWnt

Identifiers

PMID34936864
PMCPMC8741273

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.