Evidence map›Paper›PMID 34934158›Full record

ArticleCommunications biology2021

Rats exhibit age-related mosaic loss of chromosome Y.

Alberto H Orta, Stephen J Bush, Mariana Gutiérrez-Mariscal, Susana Castro-Obregón, Lorraine Jaimes-Hoy, Ricardo Grande, Gloria Vázquez, Elisa Gorostieta-Salas, Mónica Martínez-Pacheco, Karina Díaz-Barba and 5 more

Abstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Review
  3. X*Y females exhibit steeper reproductive senescence in the African pygmy mouse.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Alberto H OrtaCentro de Ciencias Genómicas, UNAM, CP62210, Cuernavaca, México.
Stephen J BushWeatherall Institute of Molecular Medicine, University of Oxford, OX3 9DS, Oxford, UK.ORCID http://orcid.org/0000-0001-9341-2562
Mariana Gutiérrez-MariscalInstituto de Biotecnología, UNAM, CP62210, Cuernavaca, México.ORCID http://orcid.org/0000-0003-0797-7714
Susana Castro-ObregónInstituto de Fisiología Celular, UNAM, Ciudad Universitaria, CP04510, Ciudad de México, México.ORCID http://orcid.org/0000-0003-0549-5690
Lorraine Jaimes-HoyInstituto de Biotecnología, UNAM, CP62210, Cuernavaca, México.ORCID http://orcid.org/0000-0002-0937-6077
Ricardo GrandeUnidad Universitaria de Secuenciación Masiva y Bioinformática, Instituto de Biotecnología, UNAM, CP62210, Cuernavaca, México.
Gloria VázquezUnidad Universitaria de Secuenciación Masiva y Bioinformática, Instituto de Biotecnología, UNAM, CP62210, Cuernavaca, México.
Elisa Gorostieta-SalasInstituto de Fisiología Celular, UNAM, Ciudad Universitaria, CP04510, Ciudad de México, México.ORCID http://orcid.org/0000-0001-8485-705X
Mónica Martínez-PachecoLaboratorio de Biología Celular y Molecular, Facultad de Ciencias Naturales, Universidad Autónoma de Querétaro, CP76010, Querétaro, México.ORCID http://orcid.org/0000-0002-8823-8907
Karina Díaz-BarbaCentro de Ciencias Genómicas, UNAM, CP62210, Cuernavaca, México.
Paola Cornejo-PáramoCentro de Ciencias Genómicas, UNAM, CP62210, Cuernavaca, México.
Alejandro Sanchez-FloresUnidad Universitaria de Secuenciación Masiva y Bioinformática, Instituto de Biotecnología, UNAM, CP62210, Cuernavaca, México.
Tamas SzékelyMilner Centre for Evolution, Department of Biology and Biochemistry, University of Bath, BA2 7AY, Bath, UK.ORCID http://orcid.org/0000-0003-2093-0056
Araxi O UrrutiaInstituto de Ecología, UNAM, Ciudad Universitaria, CP04510, Ciudad de México, México. A.Urrutia@bath.ac.uk.ORCID http://orcid.org/0000-0001-9011-8675
Diego CortezCentro de Ciencias Genómicas, UNAM, CP62210, Cuernavaca, México. dcortez@ccg.unam.mx.ORCID http://orcid.org/0000-0003-0654-6349

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mosaic loss of the Y chromosome (LOY) is the most frequent chromosomal aberration in aging men and is strongly correlated with mortality and disease. To date, studies of LOY have only been performed in humans, and so it is unclear whether LOY is a natural consequence of our relatively long lifespan or due to exposure to human-specific external stressors. Here, we explored whether LOY could be detected in rats. We applied a locus-specific PCR and target sequencing approach that we used as a proxy to estimate LOY in 339 samples covering eleven tissues from young and old individuals. We detected LOY in four tissues of older rats. To confirm the results from the PCR screening, we re-sequenced 60 full genomes from old rats, which revealed that the Y chromosome is the sole chromosome with low copy numbers. Finally, our results suggest that LOY is associated with other structural aberrations on the Y chromosome and possibly linked to the mosaic loss of the X chromosome. This is the first report, to our knowledge, demonstrating that the patterns of LOY observed in aging men are also present in a rodent, and conclude that LOY may be a natural process in placental mammals.

Indexed as

Genetic VariationMonosomyAge FactorsAgingAnimalsMaleRatsRats, WistarY Chromosome

Identifiers

PMID34934158
PMCPMC8692441

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.