Evidence map›Paper›PMID 34932985›Full record

ArticleCell host & microbe2022

Enteric virome negatively affects seroconversion following oral rotavirus vaccination in a longitudinally sampled cohort of Ghanaian infants.

Andrew HyoungJin Kim, George Armah, Francis Dennis, Leran Wang, Rachel Rodgers, Lindsay Droit, Megan T Baldridge, Scott A Handley, Vanessa C Harris

Open access · hybridAbstract read
In one paragraph

Article in Cell host & microbe, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
2.3field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 51 citations in OpenAlex.

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  12. Single cell viral tagging ofGut microbes · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Andrew HyoungJin KimDivision of Infectious Diseases, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA; Edison Family Center for Genome Sciences & Systems Biology, Washington University School of Medicine, St. Louis, MO, USA.
George ArmahNoguchi Memorial Institute for Medical Research, College of Health Sciences, University of Ghana, Legon, Ghana.
Francis DennisNoguchi Memorial Institute for Medical Research, College of Health Sciences, University of Ghana, Legon, Ghana.
Leran WangEdison Family Center for Genome Sciences & Systems Biology, Washington University School of Medicine, St. Louis, MO, USA; Department of Pathology & Immunology, Washington University School of Medicine, St. Louis, MO, USA.
Rachel RodgersEdison Family Center for Genome Sciences & Systems Biology, Washington University School of Medicine, St. Louis, MO, USA; Department of Pediatrics, Washington University School of Medicine, St. Louis, MO, USA.
Lindsay DroitDepartment of Pathology & Immunology, Washington University School of Medicine, St. Louis, MO, USA.
Megan T BaldridgeDivision of Infectious Diseases, Department of Medicine, Washington University School of Medicine, St. Louis, MO, USA; Edison Family Center for Genome Sciences & Systems Biology, Washington University School of Medicine, St. Louis, MO, USA; Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, MO, USA.
Scott A HandleyEdison Family Center for Genome Sciences & Systems Biology, Washington University School of Medicine, St. Louis, MO, USA; Department of Pathology & Immunology, Washington University School of Medicine, St. Louis, MO, USA.
Vanessa C HarrisDepartment of Global Health (AIGHD), Amsterdam University Medical Center, Academic Medical Center, Amsterdam, the Netherlands; Department of Medicine, Division of Infectious Diseases, Amsterdam University Medical Center, Academic Medical Center, Amsterdam, the Netherlands. Electronic address: v.c.harris@amsterdamumc.nl.
Washington University in St. Louis · USAmsterdam Institute for Global Health and Development · NLNoguchi Memorial Institute for Medical Research · GHUniversity of Ghana · GH

Funding

TRAINING PROGRAM IN IMMUNOLOGY AND IMMUNOGENETICST32AI007163 · NIAID · WASHINGTON UNIVERSITY · PI Kenneth M Murphy, Kodi S Ravichandran · 1985 to 2026
$14.8M
Computational and Experimental Resources for Virome Analysis in Inflammatory Bowel Disease (CERVAID)RC2DK116713 · NIDDK · WASHINGTON UNIVERSITY · PI WANG, DAVID · 2019 to 2023
$8.9M
Impact of the Intestinal Microbiome on HIV/SIV VaccinesR01OD024917 · OD · WASHINGTON UNIVERSITY · PI BALDRIDGE, MEGAN T, BAROUCH, DAN H. · 2017 to 2021
$4.3M
Norovirus regulation via bacterial modulation of interferon-lambdaR01AI139314 · NIAID · WASHINGTON UNIVERSITY · PI BALDRIDGE, MEGAN T · 2019 to 2023
$2.0M
NIAID NIH HHS R01 AI139314NIAID NIH HHS T32 AI007163NIDDK NIH HHS RC2 DK116713NIH HHS R01 OD024917
6 · The paper itself

Abstract

Rotavirus vaccines (RVVs) have substantially diminished mortality from severe rotavirus (RV) gastroenteritis but are significantly less effective in low- and middle-income countries (LMICs), limiting their life-saving potential. The etiology of RVV's diminished effectiveness remains incompletely understood, but the enteric microbiota has been implicated in modulating immunity to RVVs. Here, we analyze the enteric microbiota in a longitudinal cohort of 122 Ghanaian infants, evaluated over the course of 3 Rotarix vaccinations between 6 and 15 weeks of age, to assess whether bacterial and viral populations are distinct between non-seroconverted and seroconverted infants. We identify bacterial taxa including Streptococcus and a poorly classified taxon in Enterobacteriaceae as positively correlating with seroconversion. In contrast, both bacteriophage diversity and detection of Enterovirus B and multiple novel cosaviruses are negatively associated with RVV seroconversion. These findings suggest that virome-RVV interference is an underappreciated cause of poor vaccine performance in LMICs.

Indexed as

BacteriaBacteriophagesCohort StudiesCoinfectionFecesFemaleGastrointestinal MicrobiomeGhanaHumansImmunizationInfantIntestine, SmallMaleMetagenomeRotavirusRotavirus InfectionsRIX4414 vaccineRotavirus VaccinesVaccines, Attenuatedbacteriophageimmunizationmetagenomic sequencingmicrobiomemicrobiotaphageomerotavirus vaccine performancetranskingdom interactionvaccinationviral bacterial co-infection

Identifiers

PMID34932985
PMCPMC8763403
OpenAlexW4200257888

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.