Evidence map›Paper›PMID 34932560›Full record

ArticlePLoS computational biology2021

Multiscale model for forecasting Sabin 2 vaccine virus household and community transmission.

Michael Famulare, Wesley Wong, Rashidul Haque, James A Platts-Mills, Parimalendu Saha, Asma B Aziz, Tahmina Ahmed, Md Ohedul Islam, Md Jashim Uddin, Ananda S Bandyopadhyay and 3 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02477046 (Assessment of Community Transmission of Sabin Type 2 Virus in Bangladesh), which is not on this map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02477046 phase3unknown statusnot on this map

Assessment of Community Transmission of Sabin Type 2 Virus in Bangladesh

TypeinterventionalSponsorUniversity of VirginiaRan2015 to 2017Enrolled810ConditionsVaccine Virus SheddingArmstOPV, bOPV, IPV
3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 7 citations in OpenAlex.

  1. Pooled it
  2. Novel Network Method Major Minor Variation Clustering Enables Identification of Poliovirus Clusters with High-Resolution Linkages.Journal of computational biology : a journal of computational molecular cell biology · 2023
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Michael FamulareInstitute for Disease Modeling, Global Good, Intellectual Ventures, Bellevue, Washington, United States of America.
Wesley WongInstitute for Disease Modeling, Global Good, Intellectual Ventures, Bellevue, Washington, United States of America.ORCID 0000-0001-5664-7143
Rashidul HaqueInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.ORCID 0000-0001-5100-136X
James A Platts-MillsDepartment of Medicine, Division of Infectious Diseases and International Health, University of Virginia, Charlottesville, Virginia, United States of America.ORCID 0000-0002-4956-0418
Parimalendu SahaInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.ORCID 0000-0002-2987-7493
Asma B AzizInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.
Tahmina AhmedInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.ORCID 0000-0001-7534-4033
Md Ohedul IslamInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.ORCID 0000-0002-3403-6736
Md Jashim UddinDepartment of Medicine, Division of Infectious Diseases and International Health, University of Virginia, Charlottesville, Virginia, United States of America.ORCID 0000-0002-2466-7198
Ananda S BandyopadhyayBill & Melinda Gates Foundation, Seattle, Washington, United States of America.ORCID 0000-0002-8395-2001
Mohammed YunusInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.
Khalequ ZamanInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.
Mami TaniuchiDepartment of Medicine, Division of Infectious Diseases and International Health, University of Virginia, Charlottesville, Virginia, United States of America.ORCID 0000-0002-7559-1998
International Centre for Diarrhoeal Disease Research · BDBellevue Hospital Center · USUniversity of Virginia · USEngineering Systems (United States) · USGates Foundation · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Since the global withdrawal of Sabin 2 oral poliovirus vaccine (OPV) from routine immunization, the Global Polio Eradication Initiative (GPEI) has reported multiple circulating vaccine-derived poliovirus type 2 (cVDPV2) outbreaks. Here, we generated an agent-based, mechanistic model designed to assess OPV-related vaccine virus transmission risk in populations with heterogeneous immunity, demography, and social mixing patterns. To showcase the utility of our model, we present a simulation of mOPV2-related Sabin 2 transmission in rural Matlab, Bangladesh based on stool samples collected from infants and their household contacts during an mOPV2 clinical trial. Sabin 2 transmission following the mOPV2 clinical trial was replicated by specifying multiple, heterogeneous contact rates based on household and community membership. Once calibrated, the model generated Matlab-specific insights regarding poliovirus transmission following an accidental point importation or mass vaccination event. We also show that assuming homogeneous contact rates (mass action), as is common of poliovirus forecast models, does not accurately represent the clinical trial and risks overestimating forecasted poliovirus outbreak probability. Our study identifies household and community structure as an important source of transmission heterogeneity when assessing OPV-related transmission risk and provides a calibratable framework for expanding these analyses to other populations. Trial Registration: ClinicalTrials.gov This trial is registered with clinicaltrials.gov, NCT02477046.

Indexed as

Models, StatisticalPoliomyelitisPoliovirusPoliovirus Vaccine, OralBangladeshHumansMass VaccinationRandomized Controlled Trials as TopicPoliovirus Vaccine, Oral

Identifiers

PMID34932560
PMCPMC8726461
OpenAlexW4200610607

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.