Evidence map›Paper›PMID 34932448›Full record

ArticleEmerging infectious diseases2022

Streptococcus pneumoniae Serotypes Associated with Death, South Africa, 2012-2018.

Annelies Müller, Jackie Kleynhans, Linda de Gouveia, Susan Meiring, Cheryl Cohen, Lucy Jane Hathaway, Anne von Gottberg, for GERMS-SA

Open access · diamondAbstract read
In one paragraph

Article in Emerging infectious diseases, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Population Genetic Structure of Invasive and Non-InvasiveInternational journal of molecular sciences · 2025
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  14. Review
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  16. Genomic epidemiology ofMicrobial genomics · 2023
    Article
  17. Article
  18. Geographic migration and vaccine-induced fitness changes ofbioRxiv : the preprint server for biology · 2023
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Annelies Müller
Jackie Kleynhans
Linda de Gouveia
Susan Meiring
Cheryl Cohen
Lucy Jane HathawayThese authors contributed equally to this article.
Anne von GottbergThese authors contributed equally to this article.
for GERMS-SA
National Health Laboratory Service · ZANational Institute for Communicable DiseasesUniversity of Bern · CHUniversity of the Witwatersrand · ZA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Streptococcus pneumoniae polysaccharide capsule plays a role in disease severity. We assessed the association of serotype with case-fatality ratio (CFR) in invasive pneumococcal disease (IPD) and meningitis in South Africa, 2012-2018 (vaccine era), using multivariable logistic regression by manual backward elimination. The most common serotypes causing IPD were 8 and 19A. In patients <15 years of age, serotypes associated with increased CFR in IPD, compared with serotype 8 and controlling for confounding factors, were 11A, 13, 19F, 15A, and 6A. None of these serotypes were associated with increased CFR in meningitis. Among IPD patients >15 years of age, serotype 15B/C was associated with increased CFR. Among meningitis patients of all ages, serotype 1 was associated with increased CFR. PCV13 serotypes 1, 3, 6A, 19A, and 19F should be monitored, and serotypes 8, 12F, 15A, and 15B/C should be considered for inclusion in vaccines to reduce deaths caused by S. pneumoniae.

Indexed as

Pneumococcal InfectionsStreptococcus pneumoniaeHumansInfantPneumococcal VaccinesSerogroupSouth AfricaPneumococcal Vaccinesbacteriacase-fatality ratiomeningitis/encephalitismortalitypolysaccharide capsuleserotypeSouth AfricastreptococciStreptococcusStreptococcus pneumoniaeSwitzerland

Identifiers

PMID34932448
PMCPMC8714227
OpenAlexW4200625292

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.