Evidence map›Paper›PMID 34932262›Full record

ArticleChemMedChem2022

Dihydropyridine Lactam Analogs Targeting BET Bromodomains.

Jiewei Jiang, Logan H Sigua, Alice Chan, Prakriti Kalra, William C K Pomerantz, Ernst Schönbrunn, Jun Qi, Gunda I Georg

Open access · greenAbstract read
In one paragraph

Article in ChemMedChem, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.1field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Jiewei JiangDepartment of Medicinal Chemistry and Institute for Therapeutics Discovery and Development, College of Pharmacy, University of Minnesota, 717 Delaware Street SE, Minneapolis, MN 55414, USA.ORCID 0000-0001-5497-9371
Logan H SiguaDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.ORCID 0000-0002-1469-5398
Alice ChanMoffitt Cancer Center, Drug Discovery Department, 12902 Magnolia Drive, Tampa, Fl 33612, USA.ORCID 0000-0001-6913-6764
Prakriti KalraDepartment of Chemistry, University of Minnesota, 207 Pleasant Street SE, Minneapolis, MN 55455, USA.ORCID 0000-0002-0840-3176
William C K PomerantzDepartment of Chemistry, University of Minnesota, 207 Pleasant Street SE, Minneapolis, MN 55455, USA.ORCID 0000-0002-0163-4078
Ernst SchönbrunnMoffitt Cancer Center, Drug Discovery Department, 12902 Magnolia Drive, Tampa, Fl 33612, USA.ORCID 0000-0002-3589-3510
Jun QiDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.ORCID 0000-0002-1461-3356
Gunda I GeorgDepartment of Medicinal Chemistry and Institute for Therapeutics Discovery and Development, College of Pharmacy, University of Minnesota, 717 Delaware Street SE, Minneapolis, MN 55414, USA.ORCID 0000-0002-8900-9460
University of Minnesota · USMoffitt Cancer Center · USDana-Farber Cancer Institute · USHarvard University · US

Funding

TRANSLATIONAL RESEARCHP30CA076292 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI KENNETH Lynn WRIGHT · 1998 to 2026
$93.5M
Understanding Behavioral Patterns in Contraceptive UseU54HD093540 · NICHD · UNIVERSITY OF MINNESOTA · PI BARBER, JENNIFER S. · 2017 to 2018
$4.4M
Understanding Behavioral Patterns in Contraceptive UseP50HD093540 · NICHD · UNIVERSITY OF MINNESOTA · PI GEORG, GUNDA I. · 2019 to 2020
$3.9M
Chemical Probe Development for Epigenetic Complexes Enabled by Protein-Observed 19F NMRR35GM140837 · NIGMS · UNIVERSITY OF MINNESOTA · PI William Charles Krause Pomerantz · 2021 to 2026
$2.5M
NCI NIH HHS P30 CA076292NICHD NIH HHS HHSN275201300017CNICHD NIH HHS HHSN275201300017INICHD NIH HHS P50 HD093540NICHD NIH HHS U54 HD093540NIGMS NIH HHS R35 GM140837NIH/NICHD 5P50HD093540
6 · The paper itself

Abstract

Inhibitors of Bromodomain and Extra Terminal (BET) proteins are investigated for various therapeutic indications, but selectivity for BRD2, BRD3, BRD4, BRDT and their respective tandem bromodomains BD1 and BD2 remains suboptimal. Here we report selectivity-focused structural modifications of previously reported dihydropyridine lactam 6 by changing linker length and linker type of the lactam side chain in efforts to engage the unique arginine 54 (R54) residue in BRDT-BD1 to achieve BRDT-selective affinity. We found that the analogs were highly selective for BET bromodomains, and generally more selective for the first (BD1) and second (BD2) bromodomains of BRD4 rather than for those of BRDT. Based on AlphaScreen and BromoScan results and on crystallographic data for analog 10 j, we concluded that the lack of selectivity for BRDT is most likely due to the high flexibility of the protein and the unfavorable trajectory of the lactam side chain that do not allow interaction with R54. A 15-fold preference for BD2 over BD1 in BRDT was observed for analogs 10 h and 10 m, which was supported by protein-based

Indexed as

Bromodomain Containing ProteinsDihydropyridinesDose-Response Relationship, DrugHumansLactamsMolecular StructureNuclear ProteinsStructure-Activity RelationshipBRDT protein, humanBromodomain Containing ProteinsDihydropyridinesLactamsNuclear Proteins

Identifiers

PMID34932262
PMCPMC8762755
OpenAlexW4200164300

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.