Evidence map›Paper›PMID 34931505›Full record

ArticleJournal of veterinary science2022

Molecular diversity of the VP2 of

Cristian Camilo Galvis, Tatiana Jimenez-Villegas, Diana Patricia Reyes Romero, Alejandro Velandia, Sueli Taniwaki, Sheila Oliveira de Souza Silva, Paulo Brandão, Nelson Fernando Santana-Clavijo

Open access · goldAbstract read
In one paragraph

Article in Journal of veterinary science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Phylogenetic analysis of canine parvovirus isolates from west Mediterranean region of Türkiye.Veterinary research forum : an international quarterly journal · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Cristian Camilo GalvisCollege of Veterinary Medicine, Antonio Nariño University, Bogotá 111511, Colombia.ORCID https://orcid.org/0000-0003-2905-0418
Tatiana Jimenez-VillegasDepartment of Preventive Veterinary Medicine and Animal Health, School of Veterinary Medicine and Animal Science, University of São Paulo, São Paulo, SP 05508-270, Brazil.ORCID https://orcid.org/0000-0001-6496-2418
Diana Patricia Reyes RomeroVida Animal Veterinary Services, Bogotá 111311, Colombia.ORCID https://orcid.org/0000-0001-9267-5838
Alejandro VelandiaClinivet Veterinary Clinic, Bogotá 111021, Colombia.ORCID https://orcid.org/0000-0002-2237-5642
Sueli TaniwakiDepartment of Preventive Veterinary Medicine and Animal Health, School of Veterinary Medicine and Animal Science, University of São Paulo, São Paulo, SP 05508-270, Brazil.ORCID https://orcid.org/0000-0001-6355-7015
Sheila Oliveira de Souza SilvaDepartment of Preventive Veterinary Medicine and Animal Health, School of Veterinary Medicine and Animal Science, University of São Paulo, São Paulo, SP 05508-270, Brazil.ORCID https://orcid.org/0000-0001-6154-0009
Paulo BrandãoDepartment of Preventive Veterinary Medicine and Animal Health, School of Veterinary Medicine and Animal Science, University of São Paulo, São Paulo, SP 05508-270, Brazil.ORCID https://orcid.org/0000-0003-0213-7839
Nelson Fernando Santana-ClavijoDepartment of Preventive Veterinary Medicine and Animal Health, School of Veterinary Medicine and Animal Science, University of São Paulo, São Paulo, SP 05508-270, Brazil.ORCID https://orcid.org/0000-0001-8713-0569
Universidade de São Paulo · BRColombian Association of Surgery · COFundación Con Vida · CO

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico 307291/2017-0Conselho Nacional de Desenvolvimento Científico e Tecnológico 400604/2016-7Coordenação de Aperfeiçoamento de Pessoal de Nível Superior 001
6 · The paper itself

Abstract

background

objectivesThis study examined the presence of CPV-2 variants in the fecal samples of dogs diagnosed with canine parvovirus in Bogotá.

methodsFecal samples were collected from 54 puppies and young dogs (< 1 year) that tested positive for the CPV through rapid antigen test detection between 2014-2018. Molecular screening was developed for VP1 because primers 555 for VP2 do not amplify, it was necessary to design a primer set for VP2 amplification of 982 nt. All samples that were amplified were sequenced by Sanger. Phylogenetics and structural analysis was carried out, focusing on residue 426.

resultsAs a result 47 out of 54 samples tested positive for VP1 screening, and 34/47 samples tested positive for VP2 980 primers as subtype 2a (n = 30) or 2b (n = 4); subtype 2c was not detected. All VP2 sequences had the amino acid, T, at 440, and most Colombian sequences showed an S514A substitution, which in the structural modeling is located in an antigenic region, together with the 426 residue.

conclusionsThe 2c variant was not detected, and these findings suggest that Colombian strains of CPV-2 might be under an antigenic drift.

Indexed as

Dog DiseasesParvoviridae InfectionsParvovirus, CanineAnimalsAntigenic Drift and ShiftColombiaDogsPhylogenyCanine parvovirusmolecular characterizationmutationnucleotide sequencingphylogeny

Identifiers

PMID34931505
PMCPMC8799948
OpenAlexW4226258168

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.