Evidence map›Paper›PMID 34931503›Full record

ArticleJournal of veterinary science2022

Transcriptome profiling identifies immune response genes against porcine reproductive and respiratory syndrome virus and

Jing Zhang, Jing Wang, Xiong Zhang, Chunping Zhao, Sixuan Zhou, Chunlin Du, Ya Tan, Yu Zhang, Kaizhi Shi

Open access · goldAbstract read
In one paragraph

Article in Journal of veterinary science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Jing Zhang *Key Laboratory of Livestock and Poultry Major Epidemic Disease Monitoring and Prevention, Institute of Animal Husbandry and Veterinary Science, Guizhou Academy of Agricultural Sciences, Guiyang 550002, China.ORCID https://orcid.org/0000-0002-7281-0219
Jing Wang *Key Laboratory of Livestock and Poultry Major Epidemic Disease Monitoring and Prevention, Institute of Animal Husbandry and Veterinary Science, Guizhou Academy of Agricultural Sciences, Guiyang 550002, China.ORCID https://orcid.org/0000-0002-8884-3277
Xiong ZhangKey Laboratory of Livestock and Poultry Major Epidemic Disease Monitoring and Prevention, Institute of Animal Husbandry and Veterinary Science, Guizhou Academy of Agricultural Sciences, Guiyang 550002, China.ORCID https://orcid.org/0000-0002-5970-4614
Chunping ZhaoKey Laboratory of Livestock and Poultry Major Epidemic Disease Monitoring and Prevention, Institute of Animal Husbandry and Veterinary Science, Guizhou Academy of Agricultural Sciences, Guiyang 550002, China.ORCID https://orcid.org/0000-0002-1042-1138
Sixuan ZhouKey Laboratory of Livestock and Poultry Major Epidemic Disease Monitoring and Prevention, Institute of Animal Husbandry and Veterinary Science, Guizhou Academy of Agricultural Sciences, Guiyang 550002, China.ORCID https://orcid.org/0000-0002-2589-136X
Chunlin DuKey Laboratory of Livestock and Poultry Major Epidemic Disease Monitoring and Prevention, Institute of Animal Husbandry and Veterinary Science, Guizhou Academy of Agricultural Sciences, Guiyang 550002, China.ORCID https://orcid.org/0000-0002-3807-6508
Ya TanKey Laboratory of Livestock and Poultry Major Epidemic Disease Monitoring and Prevention, Institute of Animal Husbandry and Veterinary Science, Guizhou Academy of Agricultural Sciences, Guiyang 550002, China.ORCID https://orcid.org/0000-0003-2128-2396
Yu ZhangCollege of Animal Science, Guizhou University, Guiyang 550002, China.ORCID https://orcid.org/0000-0002-0135-392X
Kaizhi ShiKey Laboratory of Livestock and Poultry Major Epidemic Disease Monitoring and Prevention, Institute of Animal Husbandry and Veterinary Science, Guizhou Academy of Agricultural Sciences, Guiyang 550002, China. nkyxms6462@163.com.ORCID https://orcid.org/0000-0001-7255-7180
Guizhou Academy of Agricultural Sciences · CNGuizhou University · CNSichuan Agricultural University · CN

Funding

Guizhou Science and Technology Department QKHFQ [2018]4007Guizhou Science and Technology Department QKHZC [2018]2280State Key Laboratory of Veterinary Etiological Biology SKLVEB2019KFKT015Youth Fund of Guizhou Academy of Agricultural Science [2018]92
6 · The paper itself

Abstract

backgroundCo-infections of the porcine reproductive and respiratory syndrome virus (PRRSV) and the

objectivesTo understand the effect of PRRSV and/or HPS infection on the genes expression associated with lung immune function.

methodsThe expression of the immune-related genes was analyzed using RNA-sequencing and bioinformatics. Differentially expressed genes (DEGs) were detected and identified by quantitative real-time polymerase chain reaction (qRT-PCR), immunohistochemistry (IHC) and western blotting assays.

resultsAll experimental pigs showed clinical symptoms and lung lesions. RNA-seq analysis showed that 922 DEGs in co-challenged pigs were more than in the HPS group (709 DEGs) and the PRRSV group (676 DEGs). Eleven DEGs validated by qRT-PCR were consistent with the RNA sequencing results. Eleven common Kyoto Encyclopedia of Genes and Genomes pathways related to infection and immune were found in single-infected and co-challenged pigs, including autophagy, cytokine-cytokine receptor interaction, and antigen processing and presentation, involving different DEGs. A model of immune response to infection with PRRSV and HPS was predicted among the DEGs in the co-challenged pigs. Dual oxidase 1 (

conclusionsThese findings elucidated the transcriptome changes in the lungs after PRRSV and/or HPS infections, providing ideas for further study to inhibit ROS production and promote pulmonary fibrosis caused by co-challenging with PRRSV and HPS.

Indexed as

Haemophilus InfectionsPorcine Reproductive and Respiratory SyndromeAnimalsCoinfectionGene Expression ProfilingHaemophilus parasuisImmunityLungPorcine respiratory and reproductive syndrome virusSwineco-infectionHaemophilus parasuisimmune responsePorcine reproductive and respiratory syndrome virusRNA sequencing

Identifiers

PMID34931503
PMCPMC8799943
OpenAlexW3215930485

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.