Evidence map›Paper›PMID 34931066›Full record

ArticleNature chemical biology2022

Asymmetric drug binding in an ATP-loaded inward-facing state of an ABC transporter.

Tarjani M Thaker, Smriti Mishra, Wenchang Zhou, Michael Mohan, Qingyu Tang, José D Faraldo-Goméz, Hassane S Mchaourab, Thomas M Tomasiak

Open access · greenAbstract read
In one paragraph

Article in Nature chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Tarjani M Thaker *Department of Chemistry and Biochemistry, University of Arizona, Tucson, AZ, USA.
Smriti Mishra *Department of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, USA.
Wenchang ZhouTheoretical Molecular Biophysics Laboratory, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA.
Michael MohanDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, USA.ORCID http://orcid.org/0000-0001-9691-6811
Qingyu TangDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, USA.
José D Faraldo-GomézTheoretical Molecular Biophysics Laboratory, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, MD, USA.
Hassane S MchaourabDepartment of Molecular Physiology and Biophysics, Vanderbilt University, Nashville, TN, USA. hassane.mchaourab@vanderbilt.edu.ORCID http://orcid.org/0000-0002-5673-0980
Thomas M TomasiakDepartment of Chemistry and Biochemistry, University of Arizona, Tucson, AZ, USA. tomasiak@arizona.edu.ORCID http://orcid.org/0000-0002-5884-5968
Vanderbilt University · USNational Institutes of Health · USUniversity of Arizona · USSt. Jude Children's Research Hospital · US

Funding

Pacific Northwest Center for Cryo-EM - Screening supplementU24GM129547 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI EVANS, JAMES E, GOUAUX, JAMES E · 2018 to 2023
$54.8M
Molecular Mechanisms in Membrane Bioenergetics, Transport and SignalingZIAHL006203 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI FARALDO-GÓMEZ, JOSE · 2015 to 2023
$15.4M
ATP Binding Cassette (ABC) Transporters in Fungal Drug ToleranceR01AI156270 · NIAID · UNIVERSITY OF ARIZONA · PI TOMASIAK, THOMAS MICHAEL · 2021 to 2025
$1.9M
Structural dynamics of peptide-translocating ABC transportersR01GM128087 · NIGMS · VANDERBILT UNIVERSITY · PI MCHAOURAB, HASSANE S · 2019 to 2022
$1.7M
Structural mechanisms for ABC multidrug transporter selectivity and transport ABCR00GM114245 · NIGMS · UNIVERSITY OF ARIZONA · PI TOMASIAK, THOMAS MICHAEL · 2018 to 2020
$746k
JEOL JEM-1400 Transmission Electron MicroscopeS10OD011981 · OD · UNIVERSITY OF ARIZONA · PI ELLIOTT, DAVID A · 2012 to 2012
$365k
Structural mechanisms for ABC multidrug transporter selectivity and transportK99GM114245 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI TOMASIAK, THOMAS MICHAEL · 2015 to 2016
$180k
Deciphering Molecular Determinants of Activation in the HER2/HER3 Receptor ComplexF32CA216928 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI THAKER, TARJANI MAHESH · 2017 to 2018
$86k
NCI NIH HHS F32 CA216928NIAID NIH HHS R01 AI156270NIGMS NIH HHS K99 GM114245NIGMS NIH HHS R00 GM114245NIGMS NIH HHS R01 GM128087NIGMS NIH HHS U24 GM129547NIH HHS S10 OD011981
6 · The paper itself

Abstract

Substrate efflux by ATP-binding cassette (ABC) transporters, which play a major role in multidrug resistance, entails the ATP-powered interconversion between transporter intermediates. Despite recent progress in structure elucidation, a number of intermediates have yet to be visualized and mechanistically interpreted. Here, we combine cryogenic-electron microscopy (cryo-EM), double electron-electron resonance spectroscopy and molecular dynamics simulations to profile a previously unobserved intermediate of BmrCD, a heterodimeric multidrug ABC exporter from Bacillus subtilis. In our cryo-EM structure, ATP-bound BmrCD adopts an inward-facing architecture featuring two molecules of the substrate Hoechst-33342 in a striking asymmetric head-to-tail arrangement. Deletion of the extracellular domain capping the substrate-binding chamber or mutation of Hoechst-coordinating residues abrogates cooperative stimulation of ATP hydrolysis. Together, our findings support a mechanistic role for symmetry mismatch between the nucleotide binding and the transmembrane domains in the conformational cycle of ABC transporters and is of notable importance for rational design of molecules for targeted ABC transporter inhibition.

Indexed as

Adenosine TriphosphateATP-Binding Cassette TransportersBacterial ProteinsBenzimidazolesBinding SitesClostridiumCryoelectron MicroscopyModels, MolecularMolecular Dynamics SimulationProtein ConformationAdenosine TriphosphateATP-Binding Cassette TransportersBacterial ProteinsBenzimidazolesbisbenzimide ethoxide trihydrochloride

Identifiers

PMID34931066
PMCPMC9242650
OpenAlexW4200551850

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.