Evidence map›Paper›PMID 34930457›Full record

ArticleMicrobiome2021

The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes.

Tim Van Den Bossche, Magnus Ø Arntzen, Dörte Becher, Dirk Benndorf, Vincent G H Eijsink, Céline Henry, Pratik D Jagtap, Nico Jehmlich, Catherine Juste, Benoit J Kunath and 9 more

Abstract readLetterVideo-Audio Media
In one paragraph

Article in Microbiome, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 1 synthesis or guideline pooled it.

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  19. iScience · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Tim Van Den BosscheVIB-UGent Center for Medical Biotechnology, VIB, 9000, Ghent, Belgium.ORCID 0000-0002-5916-2587
Magnus Ø ArntzenFaculty of Chemistry, Biotechnology and Food Science, NMBU-Norwegian University of Life Sciences, 1432, Ås, Norway.ORCID 0000-0002-1803-727X
Dörte BecherInstitute for Microbiology, Department for Microbial Proteomics, University of Greifswald, 17498, Greifswald, Germany.ORCID 0000-0002-9630-5735
Dirk BenndorfBioprocess Engineering, Otto von Guericke University, 39106, Magdeburg, Germany.ORCID 0000-0003-4021-8525
Vincent G H EijsinkFaculty of Chemistry, Biotechnology and Food Science, NMBU-Norwegian University of Life Sciences, 1432, Ås, Norway.ORCID 0000-0002-9220-8743
Céline HenryUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, 78350, Jouy-en-Josas, France.ORCID 0000-0002-2355-1791
Pratik D JagtapDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, 6-155 Jackson Hall, 321 Church Street SE, Minneapolis, MN, 55455, USA.ORCID 0000-0003-0984-0973
Nico JehmlichHelmholtz-Centre for Environmental Research GmbH-UFZ, Department of Molecular Systems Biology, Permoserstrasse 15, 04318, Leipzig, Germany.ORCID 0000-0002-5638-6868
Catherine JusteUniversité Paris-Saclay, INRAE, AgroParisTech, Micalis Institute, 78350, Jouy-en-Josas, France.ORCID 0000-0002-3691-9866
Benoit J KunathLuxembourg Centre for Systems Biomedicine and Department of Life Sciences and Medicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg.ORCID 0000-0002-3356-8562
Bart MesuereVIB-UGent Center for Medical Biotechnology, VIB, 9000, Ghent, Belgium.ORCID 0000-0003-0610-3441
Thilo MuthSection eScience (S.3), Federal Institute for Materials Research and Testing, Berlin, Germany.ORCID 0000-0001-8304-2684
Phillip B PopeFaculty of Chemistry, Biotechnology and Food Science, NMBU-Norwegian University of Life Sciences, 1432, Ås, Norway.ORCID 0000-0002-2067-4059
Jana SeifertHoLMiR - Hohenheim Center for Livestock Microbiome Research, University of Hohenheim, Leonore-Blosser-Reisen-Weg 3, 70599, Stuttgart, Germany.ORCID 0000-0002-7690-8539
Alessandro TancaCenter for Research and Education on the Microbiota, Department of Biomedical Sciences, University of Sassari, Sassari, Italy.ORCID 0000-0002-6066-7048
Sergio UzzauCenter for Research and Education on the Microbiota, Department of Biomedical Sciences, University of Sassari, Sassari, Italy.ORCID 0000-0001-6246-2794
Paul WilmesLuxembourg Centre for Systems Biomedicine and Department of Life Sciences and Medicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg.ORCID 0000-0002-6478-2924
Robert L Hettich *Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA. hettichrl@ornl.gov.ORCID 0000-0001-7708-786X
Jean Armengaud *Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé (DMTS), SPI, 30200, Bagnols-sur-Cèze, France.ORCID 0000-0003-1589-445X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Through connecting genomic and metabolic information, metaproteomics is an essential approach for understanding how microbiomes function in space and time. The international metaproteomics community is delighted to announce the launch of the Metaproteomics Initiative (www.metaproteomics.org), the goal of which is to promote dissemination of metaproteomics fundamentals, advancements, and applications through collaborative networking in microbiome research. The Initiative aims to be the central information hub and open meeting place where newcomers and experts interact to communicate, standardize, and accelerate experimental and bioinformatic methodologies in this field. We invite the entire microbiome community to join and discuss potential synergies at the interfaces with other disciplines, and to collectively promote innovative approaches to gain deeper insights into microbiome functions and dynamics. Video Abstract.

Indexed as

Gastrointestinal MicrobiomeMicrobiotaComputational BiologyGenomicsProteomicsEducationInteractionsMetaproteomicsMicrobiomeMulti-omicsNetworking

Identifiers

PMID34930457
PMCPMC8690404

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.