Evidence map›Paper›PMID 34929333›Full record

ArticleMethods (San Diego, Calif.)2022

Biochemical analysis of DNA synthesis blockage by G-quadruplex structure and bypass facilitated by a G4-resolving helicase.

Joshua A Sommers, Katrina N Estep, Robert W Maul, Robert M Brosh

Open access · greenAbstract read
In one paragraph

Article in Methods (San Diego, Calif.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Joshua A SommersTranslational Gerontology Branch, National Institute on Aging, NIH, Baltimore, MD, United States.
Katrina N EstepDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA, United States.
Robert W MaulLaboratory of Molecular Biology and Immunology, National Institute on Aging, NIH, Baltimore, MD, United States.
Robert M BroshTranslational Gerontology Branch, National Institute on Aging, NIH, Baltimore, MD, United States. Electronic address: broshr@mail.nih.gov.
National Institute on Aging · USUniversity of Pennsylvania · US

Funding

G-quadruplexes (G4) are potential DNA roadblocks that perturb mitochondrial replication machinery and pose a clinically relevant source of mitochondrial DNA mutation and instabilityZIAAG000699 · NIA · NATIONAL INSTITUTE ON AGING · PI BROSH, ROBERT · 2018 to 2025
$1.5M
Intramural NIH HHS ZIA AG000699
6 · The paper itself

Abstract

G-quadruplex (G4) DNA poses a unique obstacle to DNA synthesis during replication or DNA repair due to its unusual structure which deviates significantly from the conventional DNA double helix. A mechanism to overcome the G4 roadblock is provided by the action of a G4-resolving helicase that collaborates with the DNA polymerase to smoothly catalyze polynucleotide synthesis past the unwound G4. In this technique-focused paper, we describe the experimental approaches of the primer extension assay using a G4 DNA template to measure the extent and fidelity of DNA synthesis by a DNA polymerase acting in concert with a G4-resolving DNA helicase. Important parameters pertaining to reaction conditions and controls are discussed to aid in the design of experiments and interpretation of the data obtained. This methodology can be applied in multiple capacities that may depend on the DNA substrate, DNA polymerase, or DNA helicase under investigation.

Indexed as

G-QuadruplexesDNADNA HelicasesDNA RepairDNA ReplicationDNADNA HelicasesDNA repairDNA replicationGenomic instabilityG-quadruplexHelicaseHuman diseaseMutagenesisNucleic acid metabolismPolymerase

Identifiers

PMID34929333
PMCPMC9203602
OpenAlexW4200303312

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.