Evidence map›Paper›PMID 34928384›Full record

ArticleNucleic acids research2022

Mutation and selection explain why many eukaryotic centromeric DNA sequences are often A + T rich.

Anne C Barbosa, Zhengyao Xu, Kazhal Karari, Wendi Williams, Silke Hauf, William R A Brown

Abstract read
In one paragraph

Article in Nucleic acids research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. CENP-A and centromere evolution in equids.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Review
  3. Review
  4. Review
  5. Article
  6. Molecular Dynamics and Evolution of Centromeres in the Genus Equus.International journal of molecular sciences · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Anne C BarbosaSchool of Life Sciences, University of Nottingham, Queen's Medical Centre, NG7 2UH, UK.
Zhengyao XuSchool of Life Sciences, University of Nottingham, Queen's Medical Centre, NG7 2UH, UK.
Kazhal KarariSchool of Life Sciences, University of Nottingham, Queen's Medical Centre, NG7 2UH, UK.
Wendi WilliamsVirginia Tech, Department of Biological Sciences, Fralin Life Sciences Institute, 1015 Life Science Circle, Blacksburg, VA 24061, USA.ORCID 0000-0003-2237-2043
Silke HaufVirginia Tech, Department of Biological Sciences, Fralin Life Sciences Institute, 1015 Life Science Circle, Blacksburg, VA 24061, USA.ORCID 0000-0001-5938-721X
William R A BrownSchool of Life Sciences, University of Nottingham, Queen's Medical Centre, NG7 2UH, UK.ORCID 0000-0001-5340-3645

Funding

The role of the cyclin B 5'UTR in cyclin translation and functionR35GM119723 · NIGMS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI HAUF, SILKE · 2016 to 2020
$1.8M
Biotechnology and Biological Sciences Research Council BB/K003356/1NIGMS NIH HHS R35 GM119723Wellcome Trust
6 · The paper itself

Abstract

We have used chromosome engineering to replace native centromeric DNA with different test sequences at native centromeres in two different strains of the fission yeast Schizosaccharomyces pombe and have discovered that A + T rich DNA, whether synthetic or of bacterial origin, will function as a centromere in this species. Using genome size as a surrogate for the inverse of effective population size (Ne) we also show that the relative A + T content of centromeric DNA scales with Ne across 43 animal, fungal and yeast (Opisthokonta) species. This suggests that in most of these species the A + T content of the centromeric DNA is determined by a balance between selection and mutation. Combining the experimental results and the evolutionary analyses allows us to conclude that A + T rich DNA of almost any sequence will function as a centromere in most Opisthokonta species. The fact that many G/C to A/T substitutions are unlikely to be selected against may contribute to the rapid evolution of centromeric DNA. We also show that a neo-centromere sequence is not simply a weak version of native centromeric DNA and suggest that neo-centromeres require factors either for their propagation or establishment in addition to those required by native centromeres.

Indexed as

Base SequenceCentromereChromatinDNA, FungalRepetitive Sequences, Nucleic AcidSchizosaccharomycesChromatinDNA, Fungal

Identifiers

PMID34928384
PMCPMC8754631

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.