Evidence map›Paper›PMID 34927211›Full record

ArticleArchives of microbiology2021

Different soil salinity imparts clear alteration in rhizospheric bacterial community dynamics in rice and peanut.

Md Majharul Islam, Rajarshi Bhattacharya, Biraj Sarkar, Pulak Kumar Maiti, Shouvik Mahanty, Punarbasu Chaudhuri, Swadesh Ranjan Biswas, Sukhendu Mandal

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Md Majharul Islam *Laboratory of Molecular Bacteriology, Department of Microbiology, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India.
Rajarshi Bhattacharya *Department of Botany, Visva-Bharati, Santiniketan, Birbhum, 731235, India.
Biraj SarkarLaboratory of Molecular Bacteriology, Department of Microbiology, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India.
Pulak Kumar MaitiLaboratory of Molecular Bacteriology, Department of Microbiology, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India.
Shouvik MahantyDepartment of Environmental Science, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India.
Punarbasu ChaudhuriDepartment of Environmental Science, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India.
Swadesh Ranjan BiswasDepartment of Botany, Visva-Bharati, Santiniketan, Birbhum, 731235, India.
Sukhendu MandalLaboratory of Molecular Bacteriology, Department of Microbiology, University of Calcutta, 35, Ballygunge Circular Road, Kolkata, 700019, India. sukhendu1@hotmail.com.ORCID http://orcid.org/0000-0002-7752-0982

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rhizospheric microbiome is capable of changing the physio-chemical properties of its own micro-environment and found to be indispensable in the overall health of the hostplant. The interplay between the rhizospheric environment and the microbiota residing therein tune the physiology of the associated plant. In this study, we have determined how the soil properties and the host-plant remains as an important parameter for microbial community dynamics in the rhizosphere of rice and peanut. In addition to check the physio-chemical parameters of the rhizospheric soil, we have also prepared the metagenomic DNA from each rhizospheric soil followed by high-throughput sequencing and sequence analysis to predict the OTUs that represents the community structure. The alpha-diversity of the bacterial community in the RRN sample was highest, while the lowest was in PRS sample. Actinobacteria is the most predominant phylum in PRN, PRS and RRN, whereas Acidobacteria in RRS. We found a clear shift in bacterial community over the rice and peanut rhizosphere and also over these host-rhizospheres from normal and high saline region. The rhizospheric bacterial community composition found to be affected by the close-by environmental factors. Thus, the rhizospheric bacterial community structure is related to both the adjoining soil characters and the type of the hosts.

Indexed as

OryzaArachisMetagenomicsSalinitySoilSoilEnvironmental factorMetagenomeMicrobial communityMicrobial ecologyRhizosphereSoil salinity

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.