Evidence map›Paper›PMID 34927025›Full record

ArticleiScience2021

Decoding gut microbiota by imaging analysis of fecal samples.

Chikara Furusawa, Kumi Tanabe, Chiharu Ishii, Noriko Kagata, Masaru Tomita, Shinji Fukuda

Abstract read
In one paragraph

Article in iScience, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Chikara FurusawaCenter for Biosystem Dynamics Research, RIKEN, Suita, Japan.
Kumi TanabeCenter for Biosystem Dynamics Research, RIKEN, Suita, Japan.
Chiharu IshiiInstitute for Advanced Biosciences, Keio University, Tsuruoka, Japan.
Noriko KagataInstitute for Advanced Biosciences, Keio University, Tsuruoka, Japan.
Masaru TomitaInstitute for Advanced Biosciences, Keio University, Tsuruoka, Japan.
Shinji FukudaInstitute for Advanced Biosciences, Keio University, Tsuruoka, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The gut microbiota plays a crucial role in maintaining health. Monitoring the complex dynamics of its microbial population is, therefore, important. Here, we present a deep convolution network that can characterize the dynamic changes in the gut microbiota using low-resolution images of fecal samples. Further, we demonstrate that the microbial relative abundances, quantified via 16S rRNA amplicon sequencing, can be quantitatively predicted by the neural network. Our approach provides a simple and inexpensive method of gut microbiota analysis.

Indexed as

Biochemistry methodsMicrobiome

Identifiers

PMID34927025
PMCPMC8652011

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.