Evidence map›Paper›PMID 34926054›Full record

ArticleCureus2021

Comparison of Fluorometric and UV Spectrophotometric Findings for DNA Isolated From Formalin-Fixed Paraffin-Embedded Blocks, Fine Needle Aspiration Cytology Smears, and Blood.

Pranoy Paul, Swati Rajput, Prashant Joshi, Manisha Naithani, Nilotpal Chowdhury, Shalinee Rao, Manju O Pai

Open access · diamondAbstract read
In one paragraph

Article in Cureus, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 8 citations in OpenAlex.

  1. Preanalytical Impact of Incomplete KDiagnostics (Basel, Switzerland) · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution.

Pranoy PaulDivision of Molecular Biology, Proteomics and Metabolomics, All India Institute of Medical Sciences, Rishikesh, IND.
Swati RajputDivision of Molecular Biology, Proteomics and Metabolomics, All India Institute of Medical Sciences, Rishikesh, IND.
Prashant JoshiDepartment of Pathology and Laboratory Medicine, All India Institute of Medical Sciences, Rishikesh, IND.
Manisha NaithaniDivision of Molecular Biology, Proteomics and Metabolomics, All India Institute of Medical Sciences, Rishikesh, IND.
Nilotpal ChowdhuryDepartment of Pathology and Laboratory Medicine, All India Institute of Medical Sciences, Rishikesh, IND.
Shalinee RaoDivision of Molecular Biology, Proteomics and Metabolomics, All India Institute of Medical Sciences, Rishikesh, IND.
Manju O PaiDivision of Molecular Biology, Proteomics and Metabolomics, All India Institute of Medical Sciences, Rishikesh, IND.
All India Institute of Medical Sciences Rishikesh

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionFine needle aspiration cytology (FNAC) smear may serve as a convenient sample for DNA extraction for molecular pathology in addition to more commonly used formalin-fixed paraffin-embedded (FFPE) sections. DNA quantification done by fluorometer is more accurate than UV vis spectrophotometer regardless of the source. This study was conducted to compare DNA yield and quality from cytology smears, FFPE sections and peripheral blood using both fluorometer and spectrophotometer. Further, introspection was made to check for the adequacy of DNA extracted from cytology smears with respect to DNA extracted from core biopsies.

methodDNA was extracted from 10 fresh peripheral blood samples, core biopsies and FNAC smears. The DNA was quantified using a fluorimeter and UV vis spectrophotometer in all cases.

resultsStatistically significant difference was seen between the data obtained from UV vis spectrophotometry and flourometry. The quantity of DNA extracted from FNAC smears was higher than that of core biopsy as per fluorometry data (mean DNA of core biopsy = 1.9ng/µl, of FNAC = 3.3ng/µl).

conclusionDNA estimation by fluorometry is more accurate and precise than spectrophotometry in FFPE, FNAC and whole blood samples. DNA yield from FNAC slides is comparable to that from core biopsies.

Indexed as

blooddnaffpefluorometerfnacuv spectrophotometer

Identifiers

PMID34926054
PMCPMC8672151
OpenAlexW3213945362

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.